| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_6672 |
|---|
| Symbol | |
|---|
| ID | 6129280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 7344865 |
|---|
| End bp | 7347153 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641646758 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001773357 |
|---|
| Protein GI | 170744702 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.594925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCAAAC GCTCCTCCCC GCCCTCCGAC CACGCCGCCC TGCCCTCCCG CGAGGCGGTG
CTGGCCTTCA TCGCGGAGGC GACCACCAAG GTCGGCAAGC GCGAGATCGC CAAGGCCTTC
GGCCTCAAGG GCGCCGACAA GGTCGAACTC AAGCGGATGC TCGCCGAGCT GAAGGACGAG
GGCGCGGTCG AGAAGGACCG GGCGGGCCTG CGCAAGGCCG GCCGCCTGCC GCCGGTCCTC
GTCGCCGAAA TCGACGCCCG CGACCGCGAC GGCGAGCTCC TCGCCCGCCC CGCCCAGTGG
GACCCGGAAG CCGGCCCGGC CCCGAAGATC CTCGTGATGG CGCCGCGCGG CCGGCGGACC
GGCAGCCTGC CCGCGCCCGG GATCGGCGAC CGGGCGCTCC TGCGCGTCGA GCCCGACCGC
GAGGCGCCGG GCCGCTATCT CGGCCGCGTC GTCAAGGTGA TCGGCCGCAA CAAGGCGGAG
ATGCTCGGGA TCTACCGCGC CCTGGAGAAG GGCGGCGGGC GCGTCCTCCC GGTCGAGAAG
CGCGCCCAGG GCCGCGAGAT CGAGATCCCG CCCGGCGAGG AGGGCGAGGC CCGCGACGGC
GACCTCGTCA GCGTCGCCCT CACCCGCGAC AGCCGCCTCG GCCTGCCCCG GGGGCGGGTC
AAGGAGCGCC TCGGCGCCGT CGCCTCCGAG AAGGCCGTGA GCCTGATCGC CCTCCACGCC
CACGGCATCC CGCACGTCTT CCCCCCCGCG GTGCTGGACG AGGCCGCGCG GGCGCGGCCG
GCCGGGATGG AGGACCGCGA GGATTGGCGC GACGCCCCCC TCCTCACCAT CGACCCGCCC
GACGCCAAGG ACCACGACGA CGCCGTGATG GCGCTGCCCG ACCCGGACCC CGCCAACGCG
GGCGGCTTCG TGGTCACGGT CGCGATCGCG GACGTCGCCG CCTATGTCCG GCCCGGCAGC
GCCCTCGACC GCGAGGCGCT GCTGCGCGGC AACTCGGTCT ACTTCCCCGA CCGGGTCGTG
CCGATGCTGC CCGAGCGCAT CTCGAACGAC CTCTGCTCCC TGCGCCCCGG CGAGGACCGC
CCGGCCCTCG CCATCCGCCT CGTCATCGGC GCGGACGGCC GCAAGAGGCG CCACAGCGTC
CACCGGGTGA TGATGCGCTC GGCCGCCAAG CTCGCCTACG CGCAGGCCCA GGCCGCGATC
GACGGGCAGC CGGACGCCGT CACGCAGCCC CTCCTCGACC CCGTCCTGCG CCCGCTCTGG
GCGGCCTACC GGGTGCTCGC CGCGGCCCGG GACGCCCGCG GCCCCCTCGC CCTCGACCTG
CCCGAGCGCA AGGTCGTCCT CGACGCCGAG GGTCGGGTCG ACCGGGTGGT GGTGCCCGAG
CGCCTGGAGG CGCACCGCCT GATCGAGGAA TTCATGATCC AGGCGAACGT CGCCGCCGCC
GAGACCCTGG AGGAGAAGGC GCAGGCCCTG ATCTACCGGG TCCACGACGA GCCCTCGCTC
GACAAGATGC GGGCGCTCGG CGAGGTGCTG GCCTCGATCG GCATCAAGCT GCCGAAGGAG
GGCGTGCTCC GGCCCTCCCT GTTCAACCGC ATCCTCGGCA TGGTCCAGGG CACCGAGCAC
CAGACCTTCC TGCACGAGGT GATCCTGCGC GCGCAGGCCC AGGCGGTCTA CGCGCCGGAG
AATGCCGGGC ATTTCGGGCT CGCCCTGCGC CGCTACGCGC ATTTCACCTC GCCGATCCGG
CGCTACGCCG ACCTCGTCGT CCACCGCGCC CTGATCCGGG CGCTGCGGCT CGGGCCGGAC
GGGCTGCCCG ACATGGGCGC GGCCGAGCTC GCCGAGATCG GCCAGCAGAT CTCCAACGCC
GAGCGCCGGG CCATGGCGGC CGAGCGCGAG ACCATCGACC GGCTCATCGC CCAGCACCTC
GCGGACCGGG TCGGCGCCAG CTTCGCGGGC CAGATCTCGG GCGTGACCAA GTCGGGGCTG
TTCGTGAAGC TCACCGAGAC CGGGGCGGAC GGCTTCGTGC CGGTCTCGAC GCTCGGGGCC
GACTATTTCC GCTACGAGGA GGGCCGCCAC GCCCTGGTGG GCGAGCGCAG CGGCGAGACC
TTCCGGCTCG GCGACCGCGT CACCGTGCGC CTGGTCGAGG CCGCGCCCGT GGCGGGCGCC
CTGCGCTTCG ACGTGGTATC GGAGGGGACG CGGTCGAGCC CGGCGCCGCG GCGCGGCGGC
CCGCGCAAGG GCCGCCCGGC GGCCGAGCGC CGCGAGGGCC TCACCAAGCG GAGGGGGAAG
CGGGCGTGA
|
|---|
| Protein sequence | MAKRSSPPSD HAALPSREAV LAFIAEATTK VGKREIAKAF GLKGADKVEL KRMLAELKDE
GAVEKDRAGL RKAGRLPPVL VAEIDARDRD GELLARPAQW DPEAGPAPKI LVMAPRGRRT
GSLPAPGIGD RALLRVEPDR EAPGRYLGRV VKVIGRNKAE MLGIYRALEK GGGRVLPVEK
RAQGREIEIP PGEEGEARDG DLVSVALTRD SRLGLPRGRV KERLGAVASE KAVSLIALHA
HGIPHVFPPA VLDEAARARP AGMEDREDWR DAPLLTIDPP DAKDHDDAVM ALPDPDPANA
GGFVVTVAIA DVAAYVRPGS ALDREALLRG NSVYFPDRVV PMLPERISND LCSLRPGEDR
PALAIRLVIG ADGRKRRHSV HRVMMRSAAK LAYAQAQAAI DGQPDAVTQP LLDPVLRPLW
AAYRVLAAAR DARGPLALDL PERKVVLDAE GRVDRVVVPE RLEAHRLIEE FMIQANVAAA
ETLEEKAQAL IYRVHDEPSL DKMRALGEVL ASIGIKLPKE GVLRPSLFNR ILGMVQGTEH
QTFLHEVILR AQAQAVYAPE NAGHFGLALR RYAHFTSPIR RYADLVVHRA LIRALRLGPD
GLPDMGAAEL AEIGQQISNA ERRAMAAERE TIDRLIAQHL ADRVGASFAG QISGVTKSGL
FVKLTETGAD GFVPVSTLGA DYFRYEEGRH ALVGERSGET FRLGDRVTVR LVEAAPVAGA
LRFDVVSEGT RSSPAPRRGG PRKGRPAAER REGLTKRRGK RA
|
|---|
| |