Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | M446_6308 |
Symbol | |
ID | 6135455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium sp. 4-46 |
Kingdom | Bacteria |
Replicon accession | NC_010511 |
Strand | - |
Start bp | 6930628 |
End bp | 6934239 |
Gene Length | 3612 bp |
Protein Length | 1203 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641646404 |
Product | transcription-repair coupling factor |
Protein accession | YP_001773008 |
Protein GI | 170744353 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0152711 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAAG CCGATCCCAA CCCGCCTTCC AAGCCGCCTT CCAAGCCGCC GGTCGCCCGG TTCGCGCTTC CCAAATCCGC CGCCCTCACC CGGGCCGTCG AGGCGCTGCG GCGGGGCGAC AGCCCCACCC TCGCCCGGGT CCCGGACGGG TTCGACGCCC TGGTCGTGGC CGACCTCGCG CGGGTGCTCG GCCAAGATCC GCAGAGCCGG GCCTCGCAGG GCCCGGCCGC GCTCGTCCAC GTCGCCCGGG ACGGCACCCG CTCGGCGGCC TTCGCGGGCG CGCTCGCCTT CGTGGCGCCC GAGATCGAGG TGCTGAGCAT CCCGGCCTGG GATTGCCAGC CCTACGACCG GGTCTCGCCG AACCCGGCCA TCGCGGCCGA GCGGATGACG GCCCTGTCGC GGCTGGCCCG CACGCGCAGC TCCGAGGAGC GCCCGCGCGT CGTCGTGACC ACGGTCAACG CCCTGGTGCA GCGGGTGCCG GCCCGCGACC GCATCGCGGT CGAGACCTTC TCGGCGGCGG TCGGCAACGC GGTCGACACC GACAAGATCG TGGCCTGGCT CGAAGCCAAC GGCTTCCTGC GCACCGGCAC CGTGCGCGAC ACCGGCGAGT ACGCGGTGCG CGGGGGCATC ATCGACCTCT CGCCGCCGGG CCTGCCCAAC CCGGTCCGCC TCGACTTCTT CGGCGACACG CTCGAATCGA TCCGCAGCTT CGATCCCGAG ACCCAGCGCA CGATCGGGCA GCTGCGCTCC CTCGACCTCG TTCCGATGAG CGAGGTGCAG CTCACCACCG AGACGATCCG GCGCTTCCGC CAGGGCTACG TCGCGGCCTT CGGGGCGGCG ACCCGCGACG ACCGGCTCTA CGAGGCGGTG AGCGAGGGGC GGCGCGCGGC CGGGCTCGAG CACTGGATGC CGCTCTTCTA CGACCGGCTC GACACGCTGT TCGACTACCT GGCGGGCGTG CCCCTGGTCT TCGACAAGGA CGTGGACGAC GCGGCGGGCG AGCGGCTCGG CCAGGTCCAG GAGTATCACG ACGCCCGCTG CGAGGCGCTG AAGGCGCCGC AGCCCGGCGT CGCGCCGTAC AAGCCGCTCG GGTCCGACGC GCTCTACCTC TCGCCGGCCG AGTGGGCGAA GCGGGTCGAG GGCGCCCGCG TCGCCCGCCT CACCCCCTTC GCGGTGCCGG AGAGCCCCGG GCGCCCGATC GTCGATTGCG AGGCCGAGCC CGCCCGCAAC TTCGCGCCCG AGCGGGCGCA GGAGGGCGTC AACGTCTTCG ACGCGGCGGT GCAGCACGTG CGCGCCCTGC AGGGCTCGGG CCACCACGTC ATCCTGGCGG CGTGGTCGGA GGGCTCGCGC GACCGGCTCT GCGGCGTGCT GACCGATCAC GGCCTGCCCA AGCCGAAGAC CGTCACCCGC CTGTCGGACA CGCTGGCATT GAAGCGCGGT CAGGACGTGG CGGTGGCGGT CTGGGGGCTG GAGGCGGGCT TCACCATCGA GCGCCTCGCG GTCGTCGCCG AGGGCGACAT CCTGGGCGAC CGGCTGGTGC GGCCCAAGCG CAAGGCCAAG CGCCCCCAGG ACGTGATCCT GGAGGTGCAG GCGCTGAGCC CCGGCGACCT CGTGGTCCAC GCGGATCACG GGATCGGCCG CTTCACCGGG CTCAAGACCG TGACGGCGGC GGGCGCGCCG CACGATTGCC TGGAGATCCA GTACAATGGC GGCCTGCTGC TGCTGCCGGT CGAGAACATC GAGCTCCTGA CCCGCTACGG CTCGGAGGAG GCCGACGTCC CCCTCGACAA GCTCGGCGGC GGGGCGTGGC AGGCGCGCAA GGCGAAGCTG AAGCGCCGCA TCCTGGAAAT GGCGGGCGCG CTCATCAAGG TGGCGGCCGA GCGCTTCCTG CGCCCCGCCC CGAAGCTGGT GCCGCCGGAC GGCACCTACG GCGAGTTCGC GGCCCGCTTC CCCTACGAGG AGACGGAGGA CCAGGAGGCG GCGATCGCCG CGACCCTCGG CGACCTCACG GCCGGGCGGC CGATGGACCG GCTGATCTGC GGCGATGTCG GCTTCGGCAA GACCGAGGTG GCGCTGCGCG CCGCCTTCGT GGCGGCGATC TCGGGCAGGC AGGTCGCCGT GGTGGTGCCC ACCACCCTGC TCGCCCGCCA GCACTACCGC ACCTTCGCGG AGCGCTTCAA AGGCCTGCCG GTGAACGTCG CCCAGGCCAG CCGCTTCGTG TCGAGCGCGG AGCTGAAGCG GGTGCGGGAG GGGCTCGCGG ACGGCACGGT CGACATCGTG GTCGGCACCC ACGCCCTGCT CGCCAAGACG ATCGGGTTCC GGGACCTCGG CCTGATCATC ATCGACGAGG AGCAGCATTT CGGCGTCGCC CACAAGGAGC GCCTCAAGGC CCTGCGCGCC GAGGTGCACG TGCTCACCCT CTCGGCGACG CCGATCCCGC GCACGCTGCA GCTCGCCATG ACGGGGGTGC GCGAACTCTC GATCATCGCG ACGCCGCCGG TGGACCGGCT GGCGGTGCGC ACCTTCGTGA CGCCCTTCGA CCCGCTGCTC GTCCGCGAGG CGCTGCTGCG CGAGCGCTAC CGGGGCGGCC AGGCCTTCTA CGTGGTGCCG CGGATCGAGC ACCTCGACGA GGTCAAGCGC TTCCTCGACC GGGAGATGCC GGAGGCCAAG GTCGGGATCG CGCACGGGCA GATGCCGGCC GGCCAGCTCG AGGACGTGAT GACGGCCTTC TACGAGGGCA AGTTCGACAT CCTGCTCTCG ACCACCATCG TCGAATCGGG CCTGGACATC CCGACCGCCA ACACCCTGAT CGTGCACCGG GCCGACATGT TCGGCCTCGC CCAGCTCTAC CAGCTGCGCG GCCGGGTCGG CCGCTCGAAG GCCCGCGCCT ACGCGCTCTT CACCACGCCC GAGGGCAAGG CCCTGACGGT GCAGGCCGAG CGGCGGCTCA AGGTGCTGCA ATCCCTCGAC ACGCTGGGGG CGGGCTTCCA GCTCGCCAGC CACGACCTCG ACATCCGCGG CGCCGGCAAC CTGCTCGGCG ACGAGCAATC CGGCCACATC AAGGAGGTCG GCTACGAACT CTACCAGCAG ATGCTGGAGG ACGCGGTCGC GGCCCTCAAG GAGGGCAAGG CGGTGCCGGC CGACGAGCAA TGGTCGCCCA CCATCGCGCT CGGCGCCCCG GTCACCATGC CGGAGGAGTA CGTCTCCGAC CTGTCGGTGC GGCTCGGCCT CTACCGGCGC CTCGCCACCC TCGACAGCGA CGCGGAGCTG GAGAGCTTCG GGGCCGAGCT GATCGACCGC TTCGGCCCGC TCCCGCCCGA GGTGGAGCAG CTCCTCAAGA TCGTCACGAT CAAGATCCTG TGCCGGGAGA CCAACGTCGA GAAGGTGGAG GCCGGGCCGA AGGGGATCGT GTTCCACTTC CGCGACCGCG CCTTCGCCAA TCCGGCGCGG CTCGCCGCCT ACATCGCCGA GCAGCGCTCC TTCGCGAAGG TCCGTCCGGA CATGAGCGTG GTGTTCATCC GCAACCTCGA CACGGTGGCC GAGCGGCTGA AGGAGACGAC CGCCATCCTG CGCGACCTCA CCAAGCTGAC GAGCCGCCGC AAGGCGGCCT GA
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Protein sequence | MAKADPNPPS KPPSKPPVAR FALPKSAALT RAVEALRRGD SPTLARVPDG FDALVVADLA RVLGQDPQSR ASQGPAALVH VARDGTRSAA FAGALAFVAP EIEVLSIPAW DCQPYDRVSP NPAIAAERMT ALSRLARTRS SEERPRVVVT TVNALVQRVP ARDRIAVETF SAAVGNAVDT DKIVAWLEAN GFLRTGTVRD TGEYAVRGGI IDLSPPGLPN PVRLDFFGDT LESIRSFDPE TQRTIGQLRS LDLVPMSEVQ LTTETIRRFR QGYVAAFGAA TRDDRLYEAV SEGRRAAGLE HWMPLFYDRL DTLFDYLAGV PLVFDKDVDD AAGERLGQVQ EYHDARCEAL KAPQPGVAPY KPLGSDALYL SPAEWAKRVE GARVARLTPF AVPESPGRPI VDCEAEPARN FAPERAQEGV NVFDAAVQHV RALQGSGHHV ILAAWSEGSR DRLCGVLTDH GLPKPKTVTR LSDTLALKRG QDVAVAVWGL EAGFTIERLA VVAEGDILGD RLVRPKRKAK RPQDVILEVQ ALSPGDLVVH ADHGIGRFTG LKTVTAAGAP HDCLEIQYNG GLLLLPVENI ELLTRYGSEE ADVPLDKLGG GAWQARKAKL KRRILEMAGA LIKVAAERFL RPAPKLVPPD GTYGEFAARF PYEETEDQEA AIAATLGDLT AGRPMDRLIC GDVGFGKTEV ALRAAFVAAI SGRQVAVVVP TTLLARQHYR TFAERFKGLP VNVAQASRFV SSAELKRVRE GLADGTVDIV VGTHALLAKT IGFRDLGLII IDEEQHFGVA HKERLKALRA EVHVLTLSAT PIPRTLQLAM TGVRELSIIA TPPVDRLAVR TFVTPFDPLL VREALLRERY RGGQAFYVVP RIEHLDEVKR FLDREMPEAK VGIAHGQMPA GQLEDVMTAF YEGKFDILLS TTIVESGLDI PTANTLIVHR ADMFGLAQLY QLRGRVGRSK ARAYALFTTP EGKALTVQAE RRLKVLQSLD TLGAGFQLAS HDLDIRGAGN LLGDEQSGHI KEVGYELYQQ MLEDAVAALK EGKAVPADEQ WSPTIALGAP VTMPEEYVSD LSVRLGLYRR LATLDSDAEL ESFGAELIDR FGPLPPEVEQ LLKIVTIKIL CRETNVEKVE AGPKGIVFHF RDRAFANPAR LAAYIAEQRS FAKVRPDMSV VFIRNLDTVA ERLKETTAIL RDLTKLTSRR KAA
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