| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_5176 |
|---|
| Symbol | |
|---|
| ID | 6135729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 5695846 |
|---|
| End bp | 5697774 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641645310 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001771935 |
|---|
| Protein GI | 170743280 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.27918 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGC TCAAGCGGCT GTACGAGGCG CAGCAGCGGC AGGCGCAGCG GCAGGATGCG
CGCAGCGCGA TCTGGTTCGT CGGCGCGCTC TACATCCTGT TCTCGATCAC GGACGCGATC
CTGATCGGCG ACGTGATCGT GTACGCAGTC CTGCTGCGGC TCGCCATCGG CACCGTCTAC
ATCGCCTGCA TCGGCCTGCA GATCAGGCGC GACGTCGACG CCCGCCTGAT TGAGCTGCAA
TGCGCCCTCG GCGTCGTCGT CGGCTACGCA TCCTGGTTGC TGCTGACCTA CTTCAGCGAC
CACAGCGCCA ACGTTTCCTA CTATCTTGCC TACGGCACCG TCTTCATGAT GGTGGCCAAT
CTGTTCTTCA ACTTCCGCTT CCGAGTCGCG CTGCTCACCT CCGGCCTGAT CACTCTGATC
TTCTTCGTCT CGGCCTTTCT GTGTTTCGAT TTCCCGTTCC ACTATTACGC CGCGATCGGG
TCGCTCTACG TCCTGAGCTT CGTTCTGACG ATCTTTATCA ACTGGAAATT GAACCTGGAG
CGTTATCGCG TGTTCCTCAA CGCGATGCGG GCGGAGATTC GCCAGCGGCA GGCGGCGGAG
CGCGGCGAGG AACTGCTGAA ACTGTCGACG ACCGACGCGC TCACGGGTCT CGCCAACCGG
CGGGCCATCG ACCAGGAGCT GCACAGCCTG TGGAAGGCAT GGCGGGAGGG GGGCGCGGCC
TTCGGGGTGG TCCTCATCGA CATCGACTAT TTCCGGATGT TCAACGACTA TTACGGTCAC
CAGCGGGGCG ATGCCGGCCT GGTCTCGATG GCGCGCGCCA TGGCGGCCGT GGCGAGGCGG
CACGGCGGGC GGATCGGCCG CTTCGGGGGC GAGGACTTCA TCCTGCTCCT GCGCTGCGAG
GAGCCGGAGG CGGTCGCCGC CGTCGCCGAG GAGGTGCGGC GGGAGGTGGA GGCGCTGGCG
ATCCCTCACG AGGCGCGGAT GGACCACCTC GCCGCCGTGA CGGCCAGCAT CGGGGCGGCC
TTCTGCCGGG GGATCGCGGC CGACAAGCCG GAGCGCATCG TCACCGCCGC CGAGCGCGCC
CTGCTGCTCG CCAAGGACAG CAACCGCAAC TGCGTCAAGC TGTTCGACGG CCGGCTGTTC
GACCGCGTCA GCAGCCAGGA CAGCGTCGCC GAGGCGGTGC GCACCGCGGT GGAGCGGGGG
CGGGTGTCGC TGGTCTTCCA GCCGATCTGG GACGTGTCGG CCGGCCGGAT CCTGGCGGCC
GAGGCCCTGA TGCGGCTCAC CGCCCCGGAC GGCACCGCGC TCTCGCCCGC GACCTTCATC
CCGGTGGCCG AGCGGACCGG GGCGATCGTG GAGCTCGGCG CCTTCGCGTT CCGGGAGGCC
TGCCGCCAGC TCGCCGCGAC CGAGGCGATC CCGATGGTCA GCGTGAACGT CTCGGCGGTG
CAGCTCGGCC GCCCCGACTT CGTCGAGACG GTCGCGGCCC TGCTGCGCGA GACCGGCGTC
GCGCCGGCCC GCCTCGCCGT CGAGATCACC GAGGGGCTGG AGATCGACAC CGATTCCCGC
GTCGCCGAGG CGATCGGCGC GCTCTCGCGG CTCGGCGTGC AGATCTGGCT CGACGATTTC
GGCACCGGCT TCGCCGGCCT GTCCTGCATC AGCCGGATCA GCTTCGACAC GATCAAGGTC
GACAGGCTCT TCGTCCAGGC CAGCGACACG CCCCGCGGCG CCAAGATGCT CAAGGACATC
GTGACGCTGG TGCAGAATTC CGGGCAGCGG ATCGTGGTCG AGGGCGTCGA GACGGCCGAC
CAGGTCGAGC TCCTGAAGCA GTACGGGGTG GCCCTGCTCC AGGGCTACTA CTTCAACCGG
CCGATGTCGG CGGAGGCGCT GCGGATGCTG GCGGCCAAGG GCGGACGGCT GGCGTCGTCC
GCCGGCTGA
|
|---|
| Protein sequence | MSVLKRLYEA QQRQAQRQDA RSAIWFVGAL YILFSITDAI LIGDVIVYAV LLRLAIGTVY
IACIGLQIRR DVDARLIELQ CALGVVVGYA SWLLLTYFSD HSANVSYYLA YGTVFMMVAN
LFFNFRFRVA LLTSGLITLI FFVSAFLCFD FPFHYYAAIG SLYVLSFVLT IFINWKLNLE
RYRVFLNAMR AEIRQRQAAE RGEELLKLST TDALTGLANR RAIDQELHSL WKAWREGGAA
FGVVLIDIDY FRMFNDYYGH QRGDAGLVSM ARAMAAVARR HGGRIGRFGG EDFILLLRCE
EPEAVAAVAE EVRREVEALA IPHEARMDHL AAVTASIGAA FCRGIAADKP ERIVTAAERA
LLLAKDSNRN CVKLFDGRLF DRVSSQDSVA EAVRTAVERG RVSLVFQPIW DVSAGRILAA
EALMRLTAPD GTALSPATFI PVAERTGAIV ELGAFAFREA CRQLAATEAI PMVSVNVSAV
QLGRPDFVET VAALLRETGV APARLAVEIT EGLEIDTDSR VAEAIGALSR LGVQIWLDDF
GTGFAGLSCI SRISFDTIKV DRLFVQASDT PRGAKMLKDI VTLVQNSGQR IVVEGVETAD
QVELLKQYGV ALLQGYYFNR PMSAEALRML AAKGGRLASS AG
|
|---|
| |