Gene M446_3529 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagM446_3529 
Symbol 
ID6131776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium sp. 4-46 
KingdomBacteria 
Replicon accessionNC_010511 
Strand
Start bp3937509 
End bp3939335 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content72% 
IMG OID641643698 
Producttranscriptional regulator NifA 
Protein accessionYP_001770346 
Protein GI170741691 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID[TIGR01817] Nif-specific regulatory protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0603248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0582265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGAGC GCGTCGTCCC GGCGCGGCTC GCGCAAAGCC AGCCGCAACC GCCGCGGCCC 
GCGCCGCAGG CGCCGAGAGC GCGGGCCGCC CCGCCGAGCC CGCCCCCATC CCCCGCGCCG
AGCCCCGCCG CGAGCCCGTC CCCGGCGCCC CGCCCGGCCG CGCGGGGCAC CTCGCCCGAG
GTGGCGCTGA TCGGCATCTA CGAGATCTCC AAGGTGCTGA CCGCGGCGCG GCGCCTCGAA
GTCACCCTCG CCAACGTGGT CAACATCCTG TCCTCGATGC TGAGCATGCA TCACGGCATG
ATCGTCATCC TCGACCGGGA GGGCGGGCCG GACATCGTCT CCAGCACCGG CTGGACGCCG
CAGGTCGCCC ACCACATCCG GGCGCGGGTG CCCCAGAAGG CGATCGACCA GATCGTCGCC
ACCGCGACCC CGCTGGTGGT GCAGGACGTC GCCGCCGACC CGCTCTTCGC GGGCCATCTC
GACCTGTTCG AGGATGCCGG CAAGGCCACG GTCTCGTTCA TCGGCGTGCC GATCAAGGCG
GATTCGCGCG TCCTCGGCAC GCTCTCGATC GACCGGATCT GGGACGGCAG CGCGCGCTTC
CGCTTCGACG AGGACACGCG CTTCCTCACC ATGGTGGCCA ACCTCGTCGG CCAAGCGGTC
CGGCTGCACA ACACGGTGGC GCAGGACCGC GACCAGCTCA TCGCCAAGAC CCACCGGCTG
GAGAAGGCGC TCGCCGAATC GAGCGCGACC TCCTCGTCGG TCGGCATCAT CGGCGAGAGC
CAGAAGGTGA AGCGCCTCGT CGCGATGACG GAGGTCGCGG CGCGCTCCAA CACCACGGTC
CTGCTGCGCG GCGAGAGCGG CACCGGCAAG GAACTCTTCG CGCGCGCCAT CCACGACCTC
TCGCCCCGCA AGGGCAAGCC CTTCGTGCGG GTGAACTGCG CGGCGCTCGC CGAGAGCGTG
CTCGAATCCG AGCTGTTCGG CCACGAGAAG GGGGCCTTCA CGGGCGCGGT CGGGACGCGC
CAGGGCCGGT TCGAACTCGC CCATGGCGGG ACGCTCTTCC TCGACGAGAT CGGCGAGGTG
AGCGCCACCT TCCAGGCCAA GCTGCTGCGC GTCCTGCAGG AGGGGGAGTT CGAGCGCGTG
GGCGGCAACC GCACCCTGCG CGTCGACGTG CGGCTGGTCT TCGCGACCAA CCGCAACCTG
GAGGAGGCGG TCGCCAAGGG CGATTTCCGC GCCGACCTCT ACTATCGCAT CAACGTGGTG
TCGCTGCTGC TGCCGCCCCT GCGCGAGCGC CAGGGCGACA TCCCGGACCT CGCGAGGGCC
TTCCTCTCCC GCTACAATGC CGAGAACAAG TCGAAGCTCG CCTTCGCGCA GACCGCGCTC
GACGTGCTGC AGAAGTGCTA CTTTCCCGGC AACGTGCGCG AACTTGAGAA TTGCGTCCGG
CGCACGGCCA CGTTGGCGGC CGGCGAGGTG ATCACCGCGC GGGACTTCGC CTGCGTGAGC
GGGCAGTGCC TCTCGGCGGT GCTCTGGAAG GGCAGCACGC AGAAGCCCGC GGGCGCGGCC
CTGGTCGCCG CTCCGGCGGC CGCGATCCCG GTGCCGATGA GCCCGGACGC GTCGCCCCCG
GCGGCCGAGG GCGAGCCGCC CGCCGCCTGC CCGGGCGCGG AGACCTGCCC GGTCGTGCGG
CCGCGCCCGA CCGAGCGGGA GCAGCTGCTG CAGGCGATGG AGCGCGCCGG CTGGGTGCAG
GCCAAGGCCG CCCGCCTCCT CAAGATCACG CCCCGCCAGA TCGGCTACGC CCTGCGCAAG
CACGGCATCG ACATCAAGCG GATCTGA
 
Protein sequence
MVERVVPARL AQSQPQPPRP APQAPRARAA PPSPPPSPAP SPAASPSPAP RPAARGTSPE 
VALIGIYEIS KVLTAARRLE VTLANVVNIL SSMLSMHHGM IVILDREGGP DIVSSTGWTP
QVAHHIRARV PQKAIDQIVA TATPLVVQDV AADPLFAGHL DLFEDAGKAT VSFIGVPIKA
DSRVLGTLSI DRIWDGSARF RFDEDTRFLT MVANLVGQAV RLHNTVAQDR DQLIAKTHRL
EKALAESSAT SSSVGIIGES QKVKRLVAMT EVAARSNTTV LLRGESGTGK ELFARAIHDL
SPRKGKPFVR VNCAALAESV LESELFGHEK GAFTGAVGTR QGRFELAHGG TLFLDEIGEV
SATFQAKLLR VLQEGEFERV GGNRTLRVDV RLVFATNRNL EEAVAKGDFR ADLYYRINVV
SLLLPPLRER QGDIPDLARA FLSRYNAENK SKLAFAQTAL DVLQKCYFPG NVRELENCVR
RTATLAAGEV ITARDFACVS GQCLSAVLWK GSTQKPAGAA LVAAPAAAIP VPMSPDASPP
AAEGEPPAAC PGAETCPVVR PRPTEREQLL QAMERAGWVQ AKAARLLKIT PRQIGYALRK
HGIDIKRI