| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_3189 |
|---|
| Symbol | |
|---|
| ID | 6134076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 3529607 |
|---|
| End bp | 3530569 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641643377 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001770029 |
|---|
| Protein GI | 170741374 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00303256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGCTCCAGA CCACGCCCCC CGACCTCCTC CCCGGCGCCG CGGACGTGCG GGAGGCGGTC
GCCTCCTGGC TGACCCTGCT CGCGCGCGAG CGCCGCTTCT CGCCCAACAC CGTCGAGGCC
TATGCGCGGG ACCTGCGCCA GTTCCTGGCC CACCGCGCGC GGGCGGGAAC CCAGCCCGAC
ATCCCGTCCC TCGTCGCCCT CAAGCCGCGC GACCTGCGCG CCTTCATGGC CGCGCGCCGG
GCCGAGGGGA TCGGCGGGCG CAGCCTGATG CGGGCGCTCG CGTCCCTGCG CTCCTTCGCC
CGCCACCTGG AGCGGGAGGG GCACGGCACG GTCTCGGCCC TCTCCGCCGT GCGCTCGCCC
AAGGTGGAGC GGCGGCTGCC ACGGCCCCTC CCGGTCGCCG CCGCCGTGGC GCTGGCAAGC
CCCGACATCC GGGCCGGCGA GGATCGCCCC GACTGGGTGC TCGCCCGCGA CGCGGCGGTG
CTCGCGCTGC TCTACGGGGC GGGTCTGCGC ATCGGCGAGG CGCTGGGCCT GCGGCGCAAG
GATGCGCCGG TCGGCGGCCT CGACACGCTC ACCATCGTGG GCAAGGGGCA GAAGACCCGC
ATGGTGCCGG TGATCGCCCC GGTCCAGGCC GCCCTGGCCG AGTACCTCGC CGCCTGCCCC
TACGCGCTCG CGCCGGACGG CCCGCTCTTC GTCGGGCAGA AGGGCGGCCC GCTCTCGCCC
CGCGTGGTGC AGCTCGCGGT CGCGTCCCTG CGCGGCGCCC TCGGCCTGCC CGACAGCGCG
ACGCCCCACG CCCTGCGCCA CTCCTTCGCC ACGCATCTCC TGGCGCGGCA GGGGGACCTG
CGCGCGATCC AGGACCTGCT CGGCCACGCC TCGCTGGCCA CCACGCAGAT CTACACCAAG
GTCGATTCCG CCCGCCTGAT GAGCGCCTTC GAGGCGGCGC ATCCGCGGGC CGGGCGGATG
TGA
|
|---|
| Protein sequence | MLQTTPPDLL PGAADVREAV ASWLTLLARE RRFSPNTVEA YARDLRQFLA HRARAGTQPD
IPSLVALKPR DLRAFMAARR AEGIGGRSLM RALASLRSFA RHLEREGHGT VSALSAVRSP
KVERRLPRPL PVAAAVALAS PDIRAGEDRP DWVLARDAAV LALLYGAGLR IGEALGLRRK
DAPVGGLDTL TIVGKGQKTR MVPVIAPVQA ALAEYLAACP YALAPDGPLF VGQKGGPLSP
RVVQLAVASL RGALGLPDSA TPHALRHSFA THLLARQGDL RAIQDLLGHA SLATTQIYTK
VDSARLMSAF EAAHPRAGRM
|
|---|
| |