Gene M446_2182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagM446_2182 
Symbol 
ID6135264 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium sp. 4-46 
KingdomBacteria 
Replicon accessionNC_010511 
Strand
Start bp2429316 
End bp2430872 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content72% 
IMG OID641642409 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_001769077 
Protein GI170740422 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0296118 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.759233 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTGT TGCAACGGCT CGAGATGCGT CAGGGCCAAG CCCTGGTGAT GACGCCGCAG 
CTCCTGCAGG CGATCAAGCT CTTGCAGCTC TCGCATCTCG ACCTCGCGGC CTACGTGGAT
GCGGAGCTGG AGCGCAACCC GCTGCTGGAG AGGGCCGAGG CCGAGGAGCC GCGCGGCGAG
GCCGCGGAGG CGCCGGTTCC GGAGGCCTAT GACGGCGAGG GCGGCGGCGA GGGCGGATTC
GAGGCCGGCG AGGCGGCGGA GCCGTGGCTC TCGCAGGACC TCAATCCCAG CCGCGCCGAC
ATCGAGAGCG ATCTCGGCAC CCATCTCGAC AACGTCTTCC CGGATGACGG CCCGACGGTC
CGCGAGCAGC CGGTGGGCGA CACCCTCTCG CTCACCCCCG CGCCCTGGGG CAGCACGGGC
GGCAGCTTCG ACGGCGAGGC GCCGGATTTC GAGGCGACCC TCACCACCGA ATCCTCGCTC
CGCGACCACC TGTCGGCCCA GCTCGACCTC GCCACCCGCG ATCCGGTCGA GCGCCTGGTC
GGCGGGTTCC TCATCGACGC CGTCGACGAG GCCGGCTACC TGCGCGAGGA CCTCGCCGCG
GTGGCGGCGC GCCTCGGCGT CGGCCTGCCC CTGGTCGAGC GGGTGCTCGC CCTCGTTCAG
ACCTTCGACC CGGCCGGGAT CGGCGCCCGC GACCTCGCCG AGTGCCTGAG CATCCAGCTG
CGCGAGCGCG ACCGCCTCGA TCCGGCCATG CAGGCCCTGG TCTCGCGCCT CGACCTCGTC
GCCAAGCGCG ACCTCGCGGC CCTGCGCCGG CTCTGCGGCG TCGACGACGA GGACCTCGCC
GACATGCTGG CCGAGCTGCG CCAGCTCGAC CCCAAGCCCG GCCGCGCCTT CGGCAGCGGC
CCGGTCGAGG TGCTGGTGCC GGACGTGTTC GTGCGCCCGG CGCCGGACGG CTCCTGGCTG
GTGGAGCTCA ACAGCGAGGC GCTGCCGCGC GTCCTCGTCA ACCAGATCTA CTATGCCACC
GTCTCGCGCG GGGCGAAGAG CGACACCGAC AAGGCCTTCC TATCGGATTG CCTCCAGACG
GCCAACTGGC TGACCCGCAG CCTGGAGCAG CGCGCCCGCA CCATCCTGAA GGTGGCGAGC
GAGATCGTGC GCCAGCAGGA CGGCTTCTTC CTCAACGGCG TCGCGCATCT GCGCCCGCTC
AACCTCAAGA CCGTGGCGGA CGCGATCGGC ATGCACGAAT CGACCGTGTC GCGGGTCACC
TCGAACAAGT CGATCGGCAC CAGCCGCGGC ACCTTCGAGA TGAAGTACTT CTTCACGGCG
GCGATCCCCG GCGCGGCGGG CGCCGCCGCC CACTCCTCCG AGGCCGTGCG CCACCGCATC
AAGCAGCTGA TCGACGCCGA GGCCGACGAC GTGCTGTCGG ACGACGCGCT CGTCCAGCGC
CTGCGCGGCG AGGGCGTCGA CATCGCCCGC CGCACCGTGG CGAAGTACCG GGAATCCCTG
CGCATCCCCT CCTCGATCGA GCGCCGCCGC GAGCGCGCCG CCCTGGCCGT GCGCTAA
 
Protein sequence
MGLLQRLEMR QGQALVMTPQ LLQAIKLLQL SHLDLAAYVD AELERNPLLE RAEAEEPRGE 
AAEAPVPEAY DGEGGGEGGF EAGEAAEPWL SQDLNPSRAD IESDLGTHLD NVFPDDGPTV
REQPVGDTLS LTPAPWGSTG GSFDGEAPDF EATLTTESSL RDHLSAQLDL ATRDPVERLV
GGFLIDAVDE AGYLREDLAA VAARLGVGLP LVERVLALVQ TFDPAGIGAR DLAECLSIQL
RERDRLDPAM QALVSRLDLV AKRDLAALRR LCGVDDEDLA DMLAELRQLD PKPGRAFGSG
PVEVLVPDVF VRPAPDGSWL VELNSEALPR VLVNQIYYAT VSRGAKSDTD KAFLSDCLQT
ANWLTRSLEQ RARTILKVAS EIVRQQDGFF LNGVAHLRPL NLKTVADAIG MHESTVSRVT
SNKSIGTSRG TFEMKYFFTA AIPGAAGAAA HSSEAVRHRI KQLIDAEADD VLSDDALVQR
LRGEGVDIAR RTVAKYRESL RIPSSIERRR ERAALAVR