| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_1275 |
|---|
| Symbol | |
|---|
| ID | 6134494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 1403210 |
|---|
| End bp | 1404592 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641641558 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_001768229 |
|---|
| Protein GI | 170739574 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0751929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCG GGACCGCCCG CTTCCTGCCC GTCCCCGGAT CGCCCCGGCC CGTCGCCCCG
CGCCCCGAGG CGGGGGCCGG TCTGGCGCGG CCGGCCGAGA TGACGAATTG GCGGCTCTAC
GCCGTCGCGG GCTACGCCCT GATCGCGCTG ACCTTCGGGG TCGTCGGCGG CTGGGCCGCG
CGGGTCCGGC TGGACCGCGC GGTCATCAGC CCGGGCGTCG TCGTGGCGGA GACGAGCCGC
AAGGTGGTCC AGCATTTCGA GGGCGGCATG GTCCTCGACG TGCTGGTGAA GGACGGCCAG
AGCGTGCGGG AGGGCGACGT CCTCCTGCGC CTCGACCCGC TGCAGTCGCG GGCGAGCGCC
GACCTGTTCC GCACCCAGCT CGACGCCGCC CTGATCCTCG AGGCCCGCCT GCGGGCCGAG
CAGGACGGGG CGGCCGACCT CGACCTGCCG CCCGACATCG TCGCGCGGCG CCACGAGGCG
CCGATCGCCC GGGCGATCGG CGACCAGCGC AGCCAGCTCG CGGAGCGCCG CAAGTCGATG
CGCGCCCAGC TCGACCTCAT CGCGGCGCGC GTGCGGCAGC TGAGGGTCGA GATGGAGGGG
CTGGCGGCCG AGAGGGCCTC GGTCGAGGCG CAGGTCCGCT ACATCGACGA GGAGCTCGGC
GGCCTGCGCA GCCTGCGCGA CAAGAACCTC ATCCCGCTCT CGCGGCTCCT GATGATGGAG
CGGGAACGCA CCCGGCTCCA GGGCGTGATC GGGCGCTCGG TGGCGGAGAC GGCCAAGGCC
GAGAACGCCA TCGGCGAGGC CGGCATGCAG GTCACCCAGA TCGAGCAGAG GCGCCAGGAA
TCCGTCACCG CCCAGCTCCT GGAGACCCGC CAGAAGATCT CCGAACTGCG CGAGAAGCTG
CTCGTCGCCC AGGACGTGCT GCGGCGGCAC GAGGTGCGCG CCCCGCACGG CGGCGTCATC
CAGGGCCTCA AGGTCTACAC GATCGGGCAG GTCGTCCGCC CCGGCGAGCC GCTGATGGAG
ATCGTCCCGA CGCGCGACCG GCTGGTGATC AGCGTGCAGT TCTCGCCGCA GGATCTGGAG
GCCGTCCATG CCGGGATGCG GGCCGAGGTC AAGCTGCCCA CCTTCCAGAC GCGCCGGACC
CCGGCGATCT TCGGGACGCT CAGGACGGTG TCGCGCGACC GGCTGATCGA CGAGGCGACC
AAGCAGCCCT ACTTCGCCGG GATCGTCGAG ATCGACGAGC ACGACGTGCC GGGCGACGTC
AGGGACCGCC TCCTGGCCGG ACTTCCCGCG GAGATCGTCC TCTCGGCCGG GGAGCGGACG
GCCCTCGACT ACATGGTCTC ACCCCTCTTC GACGCGATGG GACGTGCCTT CCATGAGCGC
TGA
|
|---|
| Protein sequence | MTTGTARFLP VPGSPRPVAP RPEAGAGLAR PAEMTNWRLY AVAGYALIAL TFGVVGGWAA
RVRLDRAVIS PGVVVAETSR KVVQHFEGGM VLDVLVKDGQ SVREGDVLLR LDPLQSRASA
DLFRTQLDAA LILEARLRAE QDGAADLDLP PDIVARRHEA PIARAIGDQR SQLAERRKSM
RAQLDLIAAR VRQLRVEMEG LAAERASVEA QVRYIDEELG GLRSLRDKNL IPLSRLLMME
RERTRLQGVI GRSVAETAKA ENAIGEAGMQ VTQIEQRRQE SVTAQLLETR QKISELREKL
LVAQDVLRRH EVRAPHGGVI QGLKVYTIGQ VVRPGEPLME IVPTRDRLVI SVQFSPQDLE
AVHAGMRAEV KLPTFQTRRT PAIFGTLRTV SRDRLIDEAT KQPYFAGIVE IDEHDVPGDV
RDRLLAGLPA EIVLSAGERT ALDYMVSPLF DAMGRAFHER
|
|---|
| |