| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_0234 |
|---|
| Symbol | |
|---|
| ID | 6133799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 284088 |
|---|
| End bp | 286163 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641640562 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001767240 |
|---|
| Protein GI | 170738585 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00586824 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAG CCACCCCCGT CTCCGAGAGC CGCGAGGGCG CGGTCGCGGT CCTGACGCTG
CAATCGGGAC CCGTGAACGC GCTCGGGACG GCGTTGCGCG AGGGCATCGC GGCGGCTCTG
GCCCGCGCCG AGGCCGATAC CGCCGTGACG GCGATCGTGC TGATCGGCGG CGGGCGGATG
TTCTCCGCGG GGGCCGACAT CACCGAGTTC GGCACGCCGC CGCGCGGCAT CTCCCTGCCG
GACCTCCTCG ACCGGATCGA GGCCGCGACG AAGCCGGTCG TCGCGGCGAT CCACGGCAAC
GCCCTCGGCG GCGGGCTCGA GACGGCGCTC GCCTGCCACT ACCGGGTGGC GGTGCCCTCC
GCGAAGGTCG GGCTGCCGGA GGTCAAGCTC GGCATCCTGC CGGGCGCGGG CGGCACGCAG
CGCCTGCCGC GCATCGTCGG GCCCCGCAAG GCGCTCGAGG TGATCGTCGG CGGCGCCCCG
CTCGGCGCCG GGCAGGCCGC CGCGATGGGG CTGATCGACG AGCTCGCCCC CGAGGAGGGC
CTGCGCGCCC ACGCGGTCGC CTTCGCGCAG CGCGTCGTCG CCGAGGGGCG GCCGCTCACC
AAGATCCGCG ACCGCGACGA GCGCCTCGCC GAGGGCCGCG ACGCGCCCGG CCTGTTCGAC
GCCTTCCGGA AGGAGAATGC CCGCAGGATG CGCGGCTTCG AGGCGCCGGA GGCCTGCATC
GCCTGCGTCG AGGCCGCCTG CCGCCTGCCC TTCCCGCAGG GCCTCGCCTT CGAGCGCGAG
CAGTTCCTGA AGCTCGTCTC CGGGAGCCAA TCCGCCGCGC AGCGCTACGT CTTCTTCGCC
GAGCGCCAGA CCGCCAAGAT CCCGGACGTG CCCGAGGACA CCCCGACCCG CCCGATCGCC
CGGGTCGGGG TGATCGGTGC CGGCACCATG GGCGGCGGCA TCGCGATGAA CTTCCTCAAT
GCCGGCATCC CGGTGACCAT CGTGGAGGCC AGGCGCGAGG CCCTCGACCG CGGCCTCGCG
GTGATCCGCA GCAATTACGA GAACACCGCC AGGAAGGGCC GCCTGCGGCC CGAGGACGTC
CAGACCCGCA TGGGCCTCCT CGCCGACACG CTGGCGATCG AGGATCTGAA GGACTGCGAC
CTCATCATCG AGGCCGTGTT CGAGGACATG GGCATCAAGA AGGAGATCTT CTCCAAGCTC
GACCGCGTCG CCAAGCCGGG CGCGATCCTG GCCTCGAACA CCTCCTACCT CGACATCGAC
GAGATCGCCT CGGTGACGGG CCGCCCCGCC GACGTGATCG GCATGCACTT CTTCTCGCCC
GCCAACGTCA TGCGGCTGCT CGAAGTGGTG CGCGGGGCGA GGACGGCCAA GGACGTGATC
GCCACCGCGA TGCAGGTCGG CCGCAAGGTC GGCAAGATCG CCGTGCTGGT CGGCGTCTGC
CACGGCTTCG TCGGCAACCG CATGCTGGCC GAGCGCCAGC GCGAGGCGAA CCGGCTGATC
CTGGAGGGCG TCACGCCCTG GGACGTGGAC CGGGTGATCT ACGAGTTCGG CCTGCCGATG
GGCCCCTTCG CGATGAGCGA CCTCGCGGGC CTCGACATCG GCTGGAGCCG GGAGACCAAC
CGCTCGGAGA GCGTGCGCGA CCTCCTCTGC GAGATCGACC GGCGCGGGCA GAAGACCGGG
GCGGGCTTCT ACGACTACGA CGCCAAGCGC AAGGCCTCGC CGTCGCCGGT CACCGAGGAG
ATCATCGCCA GGGTCGCGGC CCGGCAGGGC GTGGCGCGCA AGCCCGCCTC CGACCAGGAG
ATCCTGGAGC GCTGCCTCTA CCCGATGGTC AACGAGGGCG CGAAGATCCT CGACGAGGGC
AAGGCGATCC GCGCCTCCGA CATCGATATC GTCTGGATCA ACGGCTACGG CTGGCCGGTC
TATCGCGGCG GCCCGATGTT CTGGGCGGAC GGCATCGGCC TGCCGACGGT GCTGGAGCGC
CTGCGCGCCT ACCAGGCGGA GTACGGCGAC GCCTTCGCGC CCTCGCCCCT GCTGGAGCGG
CTCGCCGCCG AGGGGAAGGG GTTCCGGGAT CTCTGA
|
|---|
| Protein sequence | MTEATPVSES REGAVAVLTL QSGPVNALGT ALREGIAAAL ARAEADTAVT AIVLIGGGRM
FSAGADITEF GTPPRGISLP DLLDRIEAAT KPVVAAIHGN ALGGGLETAL ACHYRVAVPS
AKVGLPEVKL GILPGAGGTQ RLPRIVGPRK ALEVIVGGAP LGAGQAAAMG LIDELAPEEG
LRAHAVAFAQ RVVAEGRPLT KIRDRDERLA EGRDAPGLFD AFRKENARRM RGFEAPEACI
ACVEAACRLP FPQGLAFERE QFLKLVSGSQ SAAQRYVFFA ERQTAKIPDV PEDTPTRPIA
RVGVIGAGTM GGGIAMNFLN AGIPVTIVEA RREALDRGLA VIRSNYENTA RKGRLRPEDV
QTRMGLLADT LAIEDLKDCD LIIEAVFEDM GIKKEIFSKL DRVAKPGAIL ASNTSYLDID
EIASVTGRPA DVIGMHFFSP ANVMRLLEVV RGARTAKDVI ATAMQVGRKV GKIAVLVGVC
HGFVGNRMLA ERQREANRLI LEGVTPWDVD RVIYEFGLPM GPFAMSDLAG LDIGWSRETN
RSESVRDLLC EIDRRGQKTG AGFYDYDAKR KASPSPVTEE IIARVAARQG VARKPASDQE
ILERCLYPMV NEGAKILDEG KAIRASDIDI VWINGYGWPV YRGGPMFWAD GIGLPTVLER
LRAYQAEYGD AFAPSPLLER LAAEGKGFRD L
|
|---|
| |