Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_2893 |
Symbol | |
ID | 6124555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010508 |
Strand | + |
Start bp | 3221072 |
End bp | 3222865 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641639486 |
Product | YadA domain-containing protein |
Protein accession | YP_001766174 |
Protein GI | 170734227 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport [W] Extracellular structures |
COG ID | [COG5295] Autotransporter adhesin |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.45367 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.508754 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGGTA TCTCCGCTGC ACACTCCCGT ACGACGCGTG CCCGCTCGCA TGCTTCGCTC AAACGACAAC GCACGCCGTC CGCCCGCCTG TCGGCGCTCG CCCTCGCCAT CGCCGCACTC GCGCCGTGCT ACGGCCACGC GTCCGGCACC GATCTCGTCG AGACCAACCT GATCGTCAAG GGCGGCGACA GCGGCGACCC GATCGCCTCG GGCGCCGGCT CGATCGCAAT CGGGGCGGGC GCGAAGGCGA CCGGCGAAAC CGGTGGCGAT TATTCCGCGA TCGCGATCGG TGACAGAGCC GTCGCCAATG GTCGCTCGAC CATCGCCGTC GGCGAAGCGG CGAACGTCCA TGGCGATCGC TCGAGCGCCT TCGGCGTGTC GTCAAGCGTC AACGCGAATC GCGCGCTGGC GCTCGGCGCG GACGCGAAGG TCACCGCGCA CGGTGCGGTC GCGCTCGGCC AGGGCAGCGT CGCCGACCGC ACGAACACCG TGTCGATCGG CACGGCGGAC ACCCAGCGCC AGCTCGTCAA CCTCGGCGCA GGCACGCGCG ACACCGACGC AACCAACCTG TCGCAGTTGA AGCCCGTGGT CGCGGCGCTC GGCGGCGATG CGGCCGTCAA CGCGGACGGC ACCGTGCGCG GCCCGAACTA CACGGTGGAC GGGCGATCGT TCAACACCGT CGGCGGTGCG CTGACCCAAC TCGACGGACG CGTCACGACG ATCGACGGGC GTGTCACCAC CGTCGAAAAC AACGTCACGT CGATCCGCAA CGACGTCACC GATCTCGGCA CACGGCTCGA CAACGGCACG ACCGGCCTCG TCCGGCAGGA CCCGGCGAAT CTCGCGATCT CGATCGGCGC CGACAAGGGC GGCACGTCGG TCAGCGTCGG CGGCACTGAC GGCACGCGTA CGCTGACCGG CCTGTCGAAC GGCACCGGCG ACACCGATGC CGTGACGGTC GCGCAGCTCA AGGCGACCGG GCTGATCGAT CCGAACGGCA AGGCGCTCGG CGCGATCGTG TACGACGACC TGACGCTGAA TCGCGCCACG CTCGGCGGCG TCGGCGGCAC CTTGCTCGAC AACGTCAAGG CAGGCGCGAT CGCGGCGAGC AGCATGCAGG CCGTCAACGG CGGGCAGCTC TTCTCGATGC AGCAGCAATT CGAAACGCGC CTGGAATCGC TCGACACGCG CATCAAGAAC ATCGAGCAGG TCGGCCCGAA CACCCGGCCG CCGACCGGCG AGCAGGGCGG CCAGCTGGCG CAGCTGGGCG ACGGCTCCGG CGCGACCGGC TCGGATTCGA TGGCGCTCGG CCCGAACTCG AGCGCATCCG GCAACGGCAG CCTCGCGATC GGCAACAACA CGACCGCATC GAGCCAGAAT TCGGTGGCAC TCGGCAACGG CTCCGTCGCC GATCGCGACA ACACGGTGTC CGTCGGCGCG CCGGGGCAGG AGCGGCAAAT CACCAACGTC AAGGCCGGCA CCGCGCCGAC CGACGCCGTG AACGTGCAGC AACTGAACGA CCACATCGGC AGCGTCCGCT CCGACATGGA TCATTACCGG CGCGACGCGA GCGGCGGTAT TGCGTCGGCC GTGGCGATCG CGAACTTGCC GCAGGCATCG CTGGCAGGCG AAAGCATGGT GGCGATCGCC GGCGGCACCT ACAGCGGGCA GTCGGCCGTC GCGTTCGGCC TGTCGACTGC CACCCGCAAC GGGCGCTGGG TGGTCAAGGC ATCCGGGTCG ACCAATACCC GCGGCACGGT CGCGGTGGGC GCCGGCGCCG GCTATCGCTG GTAA
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Protein sequence | MSGISAAHSR TTRARSHASL KRQRTPSARL SALALAIAAL APCYGHASGT DLVETNLIVK GGDSGDPIAS GAGSIAIGAG AKATGETGGD YSAIAIGDRA VANGRSTIAV GEAANVHGDR SSAFGVSSSV NANRALALGA DAKVTAHGAV ALGQGSVADR TNTVSIGTAD TQRQLVNLGA GTRDTDATNL SQLKPVVAAL GGDAAVNADG TVRGPNYTVD GRSFNTVGGA LTQLDGRVTT IDGRVTTVEN NVTSIRNDVT DLGTRLDNGT TGLVRQDPAN LAISIGADKG GTSVSVGGTD GTRTLTGLSN GTGDTDAVTV AQLKATGLID PNGKALGAIV YDDLTLNRAT LGGVGGTLLD NVKAGAIAAS SMQAVNGGQL FSMQQQFETR LESLDTRIKN IEQVGPNTRP PTGEQGGQLA QLGDGSGATG SDSMALGPNS SASGNGSLAI GNNTTASSQN SVALGNGSVA DRDNTVSVGA PGQERQITNV KAGTAPTDAV NVQQLNDHIG SVRSDMDHYR RDASGGIASA VAIANLPQAS LAGESMVAIA GGTYSGQSAV AFGLSTATRN GRWVVKASGS TNTRGTVAVG AGAGYRW
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