Gene Bcenmc03_2893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_2893 
Symbol 
ID6124555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010508 
Strand
Start bp3221072 
End bp3222865 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content70% 
IMG OID641639486 
ProductYadA domain-containing protein 
Protein accessionYP_001766174 
Protein GI170734227 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures 
COG ID[COG5295] Autotransporter adhesin 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.45367 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.508754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGGTA TCTCCGCTGC ACACTCCCGT ACGACGCGTG CCCGCTCGCA TGCTTCGCTC 
AAACGACAAC GCACGCCGTC CGCCCGCCTG TCGGCGCTCG CCCTCGCCAT CGCCGCACTC
GCGCCGTGCT ACGGCCACGC GTCCGGCACC GATCTCGTCG AGACCAACCT GATCGTCAAG
GGCGGCGACA GCGGCGACCC GATCGCCTCG GGCGCCGGCT CGATCGCAAT CGGGGCGGGC
GCGAAGGCGA CCGGCGAAAC CGGTGGCGAT TATTCCGCGA TCGCGATCGG TGACAGAGCC
GTCGCCAATG GTCGCTCGAC CATCGCCGTC GGCGAAGCGG CGAACGTCCA TGGCGATCGC
TCGAGCGCCT TCGGCGTGTC GTCAAGCGTC AACGCGAATC GCGCGCTGGC GCTCGGCGCG
GACGCGAAGG TCACCGCGCA CGGTGCGGTC GCGCTCGGCC AGGGCAGCGT CGCCGACCGC
ACGAACACCG TGTCGATCGG CACGGCGGAC ACCCAGCGCC AGCTCGTCAA CCTCGGCGCA
GGCACGCGCG ACACCGACGC AACCAACCTG TCGCAGTTGA AGCCCGTGGT CGCGGCGCTC
GGCGGCGATG CGGCCGTCAA CGCGGACGGC ACCGTGCGCG GCCCGAACTA CACGGTGGAC
GGGCGATCGT TCAACACCGT CGGCGGTGCG CTGACCCAAC TCGACGGACG CGTCACGACG
ATCGACGGGC GTGTCACCAC CGTCGAAAAC AACGTCACGT CGATCCGCAA CGACGTCACC
GATCTCGGCA CACGGCTCGA CAACGGCACG ACCGGCCTCG TCCGGCAGGA CCCGGCGAAT
CTCGCGATCT CGATCGGCGC CGACAAGGGC GGCACGTCGG TCAGCGTCGG CGGCACTGAC
GGCACGCGTA CGCTGACCGG CCTGTCGAAC GGCACCGGCG ACACCGATGC CGTGACGGTC
GCGCAGCTCA AGGCGACCGG GCTGATCGAT CCGAACGGCA AGGCGCTCGG CGCGATCGTG
TACGACGACC TGACGCTGAA TCGCGCCACG CTCGGCGGCG TCGGCGGCAC CTTGCTCGAC
AACGTCAAGG CAGGCGCGAT CGCGGCGAGC AGCATGCAGG CCGTCAACGG CGGGCAGCTC
TTCTCGATGC AGCAGCAATT CGAAACGCGC CTGGAATCGC TCGACACGCG CATCAAGAAC
ATCGAGCAGG TCGGCCCGAA CACCCGGCCG CCGACCGGCG AGCAGGGCGG CCAGCTGGCG
CAGCTGGGCG ACGGCTCCGG CGCGACCGGC TCGGATTCGA TGGCGCTCGG CCCGAACTCG
AGCGCATCCG GCAACGGCAG CCTCGCGATC GGCAACAACA CGACCGCATC GAGCCAGAAT
TCGGTGGCAC TCGGCAACGG CTCCGTCGCC GATCGCGACA ACACGGTGTC CGTCGGCGCG
CCGGGGCAGG AGCGGCAAAT CACCAACGTC AAGGCCGGCA CCGCGCCGAC CGACGCCGTG
AACGTGCAGC AACTGAACGA CCACATCGGC AGCGTCCGCT CCGACATGGA TCATTACCGG
CGCGACGCGA GCGGCGGTAT TGCGTCGGCC GTGGCGATCG CGAACTTGCC GCAGGCATCG
CTGGCAGGCG AAAGCATGGT GGCGATCGCC GGCGGCACCT ACAGCGGGCA GTCGGCCGTC
GCGTTCGGCC TGTCGACTGC CACCCGCAAC GGGCGCTGGG TGGTCAAGGC ATCCGGGTCG
ACCAATACCC GCGGCACGGT CGCGGTGGGC GCCGGCGCCG GCTATCGCTG GTAA
 
Protein sequence
MSGISAAHSR TTRARSHASL KRQRTPSARL SALALAIAAL APCYGHASGT DLVETNLIVK 
GGDSGDPIAS GAGSIAIGAG AKATGETGGD YSAIAIGDRA VANGRSTIAV GEAANVHGDR
SSAFGVSSSV NANRALALGA DAKVTAHGAV ALGQGSVADR TNTVSIGTAD TQRQLVNLGA
GTRDTDATNL SQLKPVVAAL GGDAAVNADG TVRGPNYTVD GRSFNTVGGA LTQLDGRVTT
IDGRVTTVEN NVTSIRNDVT DLGTRLDNGT TGLVRQDPAN LAISIGADKG GTSVSVGGTD
GTRTLTGLSN GTGDTDAVTV AQLKATGLID PNGKALGAIV YDDLTLNRAT LGGVGGTLLD
NVKAGAIAAS SMQAVNGGQL FSMQQQFETR LESLDTRIKN IEQVGPNTRP PTGEQGGQLA
QLGDGSGATG SDSMALGPNS SASGNGSLAI GNNTTASSQN SVALGNGSVA DRDNTVSVGA
PGQERQITNV KAGTAPTDAV NVQQLNDHIG SVRSDMDHYR RDASGGIASA VAIANLPQAS
LAGESMVAIA GGTYSGQSAV AFGLSTATRN GRWVVKASGS TNTRGTVAVG AGAGYRW