| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_2398 |
|---|
| Symbol | |
|---|
| ID | 6124062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 2679724 |
|---|
| End bp | 2681145 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641638989 |
|---|
| Product | alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
|---|
| Protein accession | YP_001765681 |
|---|
| Protein GI | 170733734 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0766613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAT TGATCGTGGT ATCGAATCGT GTCGCCGCCG GCGAGGACAC GCGCCCGAGC
GCGGGCGGCC TGGCCGTCGG CGTGATGGAC GCGCTGAAGG AAACGGGCGG CGTCTGGTTC
GGCTGGAACG GCGAGATCGT CGGGGCGCCG GATGCCGAGC CCGCGATCCA GCGGGACGGC
AACGTGACGT ATGCGACGGT CGGGCTGACC CGACGCGACT ACGACCAGTA CTACCGCGGT
TTCTCGAACG CGACGCTGTG GCCGGTGTTC CACTACCGCG GCGATCTCGC GCGCTTCGAT
CGGCAGGAGT ACGCCGGTTA TCTGCGCGTG AACGCGATGC TCGCGAAGCA GCTCGCCGCG
CTGCTGCGTC CGGACGACCT GATCTGGGTG CACGACTACC ACCTGCTGCC GTTCGCGCAC
TACCTGCGCG AACTCGGCGT GAAGAACCCG ATCGGCTTCT TCCTGCACAT CCCGTTTCCG
TCGCCCGACA TGCTGCGCCT CGTGCCGCCG CACGAGGAAC TCGTGAAGTT CATGTGCGCG
TACGACGTCG CGGGCTTCCA GACCGAGGCC GACAAACAGG CGTTCACCGA CTACATCGAG
CGGCGCGGCA TCGGTGCGGC GAGCGAGGAC GGGATGCTGC ACGCGCATGG CCGCGTCGTG
AAGGTCGCGG CTTATCCGAT CGGCGTGCAT CCCGACGCGA TCGCGCAGGC GGCCGTCCAG
TACGGCACGC GCAAGCCGGT GAAGATGCTG CGCGAGGCGC TGGGCGACCG CAAGCTGGTG
ATGAGCGTCG ACCGCCTCGA TTACTCGAAG GGGCTCGTCG AGCGCTTCCA GTCGTTCGAG
CGGATGCTCG CGAATGCGCC GGGCTGGCAG GGGCGCGTGT CGCTGCTGCA GATCGCGCCG
CCGACACGTT CCGACGTGCA GACCTATCAG CAGATCCGCG AAACGCTCGA AGGCGAGGCC
GGCCGCATCA ACGGCCGCTT CTCGCAGCTC GACTGGACGC CGATCCAGTA CCTGAACCGC
AAGTACGAGC GCAACCTGCT GATGGCGTTC TTCCGGATGT CGCAGGTCGG CTACGTGACG
CCGCTGCGCG ACGGGATGAA CCTCGTCGCG AAGGAATACG TCGCATCGCA GGACCCGGCC
GATCCGGGCG TGCTGGTGCT GTCGGAGTTC GCGGGCGCGG CGGCCGAGCT GACCGGCGCG
CTGCTCGTCA ATCCGTACGA CCTGTCGCAG ATGGCCGAGG CGCTCGAACG CGCGCTGTCG
ATGCCGCTCG CGGAGCGGCA GGCGCGTCAC GAGCAGAATC TCGCGCGGCT GCGCGAGAAC
GACCTGTCGG TGTGGCGCGA TACGTTCGTC GCCGACCTGC GCAGCGTCGC GGCGGCGGCG
TCGGTCACGC GGCGTGCGGG CCGGCGCGTC GCGCATGCGT GA
|
|---|
| Protein sequence | MSRLIVVSNR VAAGEDTRPS AGGLAVGVMD ALKETGGVWF GWNGEIVGAP DAEPAIQRDG
NVTYATVGLT RRDYDQYYRG FSNATLWPVF HYRGDLARFD RQEYAGYLRV NAMLAKQLAA
LLRPDDLIWV HDYHLLPFAH YLRELGVKNP IGFFLHIPFP SPDMLRLVPP HEELVKFMCA
YDVAGFQTEA DKQAFTDYIE RRGIGAASED GMLHAHGRVV KVAAYPIGVH PDAIAQAAVQ
YGTRKPVKML REALGDRKLV MSVDRLDYSK GLVERFQSFE RMLANAPGWQ GRVSLLQIAP
PTRSDVQTYQ QIRETLEGEA GRINGRFSQL DWTPIQYLNR KYERNLLMAF FRMSQVGYVT
PLRDGMNLVA KEYVASQDPA DPGVLVLSEF AGAAAELTGA LLVNPYDLSQ MAEALERALS
MPLAERQARH EQNLARLREN DLSVWRDTFV ADLRSVAAAA SVTRRAGRRV AHA
|
|---|
| |