| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1968 |
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| Symbol | |
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| ID | 6123632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010508 |
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| Strand | + |
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| Start bp | 2188437 |
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| End bp | 2191907 |
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| Gene Length | 3471 bp |
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| Protein Length | 1156 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641638540 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001765251 |
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| Protein GI | 170733304 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.095546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGATA ACGCTTCCAT CCCGTCCGCT TCACCCGTTG CCCGCGTCAA GCCCGGCCAG
CGTTTCGCCT TCGACGGCGC GCACGGCTCC GCCGACGCGC TCGCCATCGC CCGTTATCTC
GCCGACAACC GTCAGGACGT GCCGCTCCTC GCGGTGATCT GCGCGAACGC GGTCGACGCG
CAGCGGCTGT CGCAGGAAAT CCGCTACTTC TCGCCCGAGG CGCGCGTGCG CCTGCTGCCC
GACTGGGAAA CGCTGCCGTA CGACACGTTC TCGCCGCACC AGGACCTCGT GTCCGAGCGG
CTGGCCACGC TGCACGACCT CGGCGAGGGC CGCTGCGACA TCCTGCTCGT GCCCGCCACC
ACCGCGCTGT ACCGGATGCC GCCCGCGTCG TTCATGGCCG CGTACACGTT CGCGTTCGCG
CAGGGCGAGC GGCTCGACGA GGCGAAGCTG AAGGCGCAGC TCACGCTGGC CGGCTACGAG
CACGTGAGCC AGGTTGTGCG GCCCGGCGAA TACTGCGTGC GCGGCTCGCT GATCGACCTG
TACCCGATGG GCTCGCCGCT GCCGTACCGG ATCGACCTGT TCGACGACCA GGTCGACTCG
ATCCGCGCGT TCGATCCCGA CACGCAGCGC AGCCTCTACC CGGTGCGTGA CGTGCGCCTG
CTGCCCGGCC GCGAGTTCCC GTTCGACGAA GCCGCGCGCA CGGCCTTCCG CAGCCGCTGG
CGCGAAACCT TCGAAGGCGA CCCGAGCCGC GCGCCGATCT ACAAGGACAT CGGCAACGGC
GTGCCGTCGG CCGGCATCGA GTATTACCTG CCGCTGTTCT TCGACGAGAC GGCCACGCTG
TTCCACTACC TGCCGCAGGA CGCGCACCTC GTGTTCACCG GCGACCTCGA AGCGTCGATC
CGCCGCTTCA CGGCCGATAC GAAGCAGCGT CACGCGTTCC TCGCGCACGA TCGCGAGCGG
CCGATCCTCG AGCCGCAGCG CCTCTTCCTG TCCGACGAGG ATTTCTTCGC GTTCGCGAAG
CCGTTCGCGC GCGTCGTGCT GCCCGCGCAG CCGGCCGGCG GCTGGGCGAC CGGCCTGCCC
GAGCTCACCG TCGACCGCCA TGCGGACGAT CCGCTCGCGT CGCTGCGCAC GTTCGTCGAA
TCGTCGGGCA AGCGCGTGCT GCTGACGGTC GAATCGGCCG GCCGTCGGGA AACGATCCTG
CAACTGCTCG CCGAACATCA CCTGCGGCCG TCGTCGAACG ACGATTTCGC GAGCTGGCTG
GCGAGCGATG CGCGCTTCGC GCTCGGCGTC GCGCCGCTCT CGAACGGCTT CGCGGTGCCG
GGCGAAGGCT ACGCGATCGT CACCGAAACC GAGCTGTACG GCGCGCTCGG CCGCCGCGCG
GGCCGCCGCC GGCAGGAACA GGCGAGCAAC GTCGACGCGA TGGTGCGCGA CCTGTCGGAG
CTGAAGGTCG GCGACCCGGT CGTCCACGCG CAGCACGGCA TCGGCCGCTA CATGGGCCTC
GTGTCGATGG ATCTGGGCGA AGGCGAGACC GAATTCCTGC ATCTCGAATA CTCGGGCGAC
AGCAAGCTCT ACGTGCCCGT CGCTCAACTG CACGTGATCT CGCGCTACAG CGGCGCCGAT
CCCGACAGCG CGCCGCTGCA CGCGCTCGGC TCCGGCCAGT GGGAGCGCGC GAAGCGCAAG
GCCGCGCAGC AGATCCGCGA CACGGCCGCC GAGCTGCTGA ACCTGTACGC GCGCCGCGCG
GCCCGCGAAG GCCACGCGTT CTCGCTCGAC CCGCGCGACT ACGTGAAATT CGCGGAAAGC
TTCGGCTTCG AGGAAACGCC CGACCAGGCC GCGGCGATCG CGGCCGTGAT CGGCGACATG
ACGAGCGGCA AGCCGATGGA CCGCCTCGTG TGCGGCGACG TCGGCTTCGG CAAGACCGAG
GTTGCGCTGC GCGCGGCGTT CATCGCGGTG CTGGGCGGCA AGCAGGTCGC GCTGCTGTCG
CCGACCACGC TGCTCGCCGA GCAGCACACG CAGACCTTCG CGGACCGCTT CGCGGACTGG
CCGGTGCGCA TCGTCGAGCT GTCGCGCTTC AAGACCGCGA AGGAAGTGAA CGCGGCGATC
GCGCAGATCA ACGAAGGCAG CGTCGACATC GTGATCGGCA CGCACAAGCT GCTGTCGTCG
GACGTGCAGT TCAAGCGCCT CGGCCTCGTG ATCATCGACG AGGAACACCG CTTCGGCGTG
CGCCAGAAGG AAGCGCTGAA GGCGCTGCGC GCGGAAGTCG ACGTGCTGAC GCTCACCGCG
ACGCCGATCC CGCGTACGCT CGGGATGGCG CTCGAAGGGC TGCGCGATTT CTCGGTGATC
GCGACCGCGC CGCAGAAGCG GCTCGCGATC AAGACCTTCG TGCGCCGCGA GGAAGAAAGC
GTGATCCGCG AGGCGATGCT GCGCGAGCTG AAGCGCGGCG GCCAGGTGTA CTTCCTGCAC
AACGAAGTCG AGACGATCGA GAACCGCAAG GCGATGCTCG AGGCGCTCGT GCCCGAGGCG
CGCATCGTGA TCGCGCACGG CCAGATGCAC GAGCGCGAAC TCGAACGCGT GATGCGCGAT
TTCGTCGCGC AGCGCGCGAA CGTGCTGCTG TGCACGACCA TCATCGAGAC CGGCATCGAC
GTGCCGAGCG CGAACACGAT CATCATGCAC CGCGCGGACA AGTTCGGCCT CGCGCAGCTT
CACCAGCTGC GCGGCCGCGT CGGCCGTTCG CACCACCAGG CGTATGCGTA CCTGCTGGTC
CACGATCCGC AGTCGCTGAC CAAGCAGGCG CAGCGCCGGC TGGAGGCGAT CCAGCAGATG
GAGGAACTGG GCTCGGGCTT CTATCTCGCG ATGCACGACC TCGAGATCCG CGGCACCGGC
GAGGTGCTCG GCGACAAGCA GTCGGGCGAA ATCCACGAGA TCGGCTTCCA GCTCTATACG
GACATGCTGA ACGACGCGGT GAAGGCGCTG AAGAACGGCA AGGAGCCCGA CCTCACCGCC
CCGCTCGCCG CGACGACCGA AATCAACCTG CATGCGCCCG CGATCCTGCC GGCCGACTAC
TGCGCGGACG TGCAGGAGCG GCTGTCGCTG TACAAGCGGC TCGCGAACTG CGAGCACGGC
GACGCGATCG ACGGCATCCA GGAAGAGCTG ATCGACCGTT TCGGCAAGCT GCCGCCGCAG
GCGCACGCGC TCGTCGAGAC GCACCGGCTG CGGATCGCCG CGAAGCCGCT CGGCATCGTG
AAGATCGATG CGAGCGAGGT CGCGATCGGG CTGCAGTTCG AGCCGAATCC GCCGATCGAT
CCGATGCGGA TCATCGAGAT GGTGCAGAAG CATCGTCACA TCAAGCTCGC GGGCCAGGAC
AAGCTGCGCA TCGAGACGCG CTCGCCCGAT CTCGCGATCC GCGTGTCGAC GATCAAGGAA
ACGCTGCGCG CGCTCGGCCC GAAACAGGGG GCGGCCGTCG CGGCCCGCTG A
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| Protein sequence | MPDNASIPSA SPVARVKPGQ RFAFDGAHGS ADALAIARYL ADNRQDVPLL AVICANAVDA
QRLSQEIRYF SPEARVRLLP DWETLPYDTF SPHQDLVSER LATLHDLGEG RCDILLVPAT
TALYRMPPAS FMAAYTFAFA QGERLDEAKL KAQLTLAGYE HVSQVVRPGE YCVRGSLIDL
YPMGSPLPYR IDLFDDQVDS IRAFDPDTQR SLYPVRDVRL LPGREFPFDE AARTAFRSRW
RETFEGDPSR APIYKDIGNG VPSAGIEYYL PLFFDETATL FHYLPQDAHL VFTGDLEASI
RRFTADTKQR HAFLAHDRER PILEPQRLFL SDEDFFAFAK PFARVVLPAQ PAGGWATGLP
ELTVDRHADD PLASLRTFVE SSGKRVLLTV ESAGRRETIL QLLAEHHLRP SSNDDFASWL
ASDARFALGV APLSNGFAVP GEGYAIVTET ELYGALGRRA GRRRQEQASN VDAMVRDLSE
LKVGDPVVHA QHGIGRYMGL VSMDLGEGET EFLHLEYSGD SKLYVPVAQL HVISRYSGAD
PDSAPLHALG SGQWERAKRK AAQQIRDTAA ELLNLYARRA AREGHAFSLD PRDYVKFAES
FGFEETPDQA AAIAAVIGDM TSGKPMDRLV CGDVGFGKTE VALRAAFIAV LGGKQVALLS
PTTLLAEQHT QTFADRFADW PVRIVELSRF KTAKEVNAAI AQINEGSVDI VIGTHKLLSS
DVQFKRLGLV IIDEEHRFGV RQKEALKALR AEVDVLTLTA TPIPRTLGMA LEGLRDFSVI
ATAPQKRLAI KTFVRREEES VIREAMLREL KRGGQVYFLH NEVETIENRK AMLEALVPEA
RIVIAHGQMH ERELERVMRD FVAQRANVLL CTTIIETGID VPSANTIIMH RADKFGLAQL
HQLRGRVGRS HHQAYAYLLV HDPQSLTKQA QRRLEAIQQM EELGSGFYLA MHDLEIRGTG
EVLGDKQSGE IHEIGFQLYT DMLNDAVKAL KNGKEPDLTA PLAATTEINL HAPAILPADY
CADVQERLSL YKRLANCEHG DAIDGIQEEL IDRFGKLPPQ AHALVETHRL RIAAKPLGIV
KIDASEVAIG LQFEPNPPID PMRIIEMVQK HRHIKLAGQD KLRIETRSPD LAIRVSTIKE
TLRALGPKQG AAVAAR
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