| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1966 |
|---|
| Symbol | ispF |
|---|
| ID | 6123630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 2187103 |
|---|
| End bp | 2187588 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641638538 |
|---|
| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_001765249 |
|---|
| Protein GI | 170733302 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0375499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA GAATCGGACA AGGCTATGAC GTGCACCAGC TCGTCGAAGG GCGCCCCCTC
ATCATCGGCG GCGTGACGAT TCCGTACGAG CGCGGCCTGC TCGGCCACTC GGACGCGGAC
GTGCTGCTGC ATGCGATCAC CGACGCGCTG TTCGGCGCGG CGGCGCTCGG CGACATCGGC
CGCCATTTCT CCGATACCGA CGCGGCGTTC AAGGGCGCGG ACAGCCGCGT GCTGCTGCGC
GCGTGTGCCG AGCGCGTGAA GGCGGCCGGC TTCACGATCC AGAACGTCGA CAGCACCGTG
ATCGCGCAGG CGCCGAAGCT CGCGCCGCAT ATCGACGGGA TGCGCGCGAA CATCGCGGCG
GATCTCGGGC TGCCGCTCGA GCGCGTGAAC GTGAAGGCGA AGACCAACGA GAAGCTCGGC
TATCTCGGCC GCGGCGAGGG GATCGAGGCG CAGGCCGCCG CGCTGCTGGT GAAGCAGGGC
GGCTGA
|
|---|
| Protein sequence | MDFRIGQGYD VHQLVEGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAL FGAAALGDIG
RHFSDTDAAF KGADSRVLLR ACAERVKAAG FTIQNVDSTV IAQAPKLAPH IDGMRANIAA
DLGLPLERVN VKAKTNEKLG YLGRGEGIEA QAAALLVKQG G
|
|---|
| |