Gene Bcenmc03_1635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_1635 
Symbol 
ID6123311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010508 
Strand
Start bp1825283 
End bp1826791 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content68% 
IMG OID641638216 
ProductTPR repeat-containing protein 
Protein accessionYP_001764930 
Protein GI170732983 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.628977 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0608615 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCCC ACCGCGACAC TCTTCCGATA GACGATGCGG CCGTCACGCC GGTCAGGGAA 
CACTATGTAC AGGGCCGATT CGACGCCGCG ATCCAGGCGG CGGAATCGCT CGTCACGCAG
CACGGCGATC ACGGTGAATT GCTGAACCTC GCGGGCGTGT GCCATTTGAA GCTCGGTAAC
CTCGCCGCCG CCGAGGCGTG CCTCGAGCGG GCAGCGTACG CGGCGCCCCG GTCGGCCGAT
ATCGACAACA ACCTGGGCGT ACTCTATCAG TCGAGCGGGC GGGATGCCGA CGCCGAGCGG
GCGTTCGTGC GCGCCGTTTC GAAAGCACCG GGCCACGGTC AGGCGCACCT CAATCTCGGC
ATGCTGTTGC GGTCCAGGCA TCGTCTGGAA GAGGCGGAAC GGGCGATCCG GATCGCCGTC
GAGCAGGCGC CGGGCGATCA CGCAGCGCTG AATGCGCTCG GCCTGGTGTT GAAGGACCTG
GGCCGCTACG ACGAAGCCGA GGCGGCCTAT CGGCAGGCGC TGGCGCTCGA ACCCGGGCGT
GCCGAATACC GGCTCAATCT GGCGAATGTG CTGCTGCACC GGAACGACTG GATCGCGGGG
TTGCCGCTCT TCGAAGCGCG TCATGCCCCC GATCTCAACG GCGCCTTCTC CGACGCGCCT
GCCGTATCGT TCCCGCAGTG GCAGGGCGAG CCGATCGACG GCGCGTCGCT GCTGATCTGG
CCGGAACAGG GGCACGGCGA CCAGATCCAG CTGGTCCGCT ATGTCAAAAA ACTCCGCATG
CTCGGGGCGA AACGGATCAC GCTGGTGTGC TCGGCCGCGA CGCAGCGGCT GTTCGCGACC
CTCCCCGAAG CGGATGCCGT CGTGGCGCGC GACAGGTTCG ATCCGGCCGC CTGCCCGCGT
CACGATTTCT GGACCTGCGT GTGGAGTATT CCCGTCAATC TGCGGGAATC GCCGGCGTCC
ATTCCGGCCA CGCTGCCTTA TCTGCGCGCG CCTCGGCATG CGGCGTCGAA ATGGGACCGG
CTGATGCCCA AAGGGCGCCT GCGCGTCGGC CTGGTGTGGC AAGGCAATCC CGGTCACGCG
AACGACCGCG TGCGCTCGCT GCCCGGCCTG CAGACGCTCG CGCCGCTGTG GGACATCGAC
GGCGTCACGT TCGTCAGTCT GCAGAAGAGC GCGAATGAGG CCGATCTGCG CGCCGGAATC
GGCGATCGCT TCATCGTCAA TCTGGGCAAC CGGACCACCG ATTTCGCCGA TGTCGCCGCG
ATCGTCGCGC GGCTCGATCT CGTCATCGGC GTCGATACCG CCGTGATGCA CCTGAGCGCG
GCGCTCGGCA AGCCCGCGTG GATTCTGCTG TCGAACGTGG GCACGGACTG GCGCTGGAGC
GGTGCGGGCA CGACTTCCGT GTGGTACCCG GGCGTCGTCA CGCTGTTTCG GCAGGCGGCG
ACGGAAACGG ACTGGTCCGG CGTGGTCGCA CGCGTTTCGC AGGCGTTGTC CGCGATGCGT
GCGACATAG
 
Protein sequence
MQPHRDTLPI DDAAVTPVRE HYVQGRFDAA IQAAESLVTQ HGDHGELLNL AGVCHLKLGN 
LAAAEACLER AAYAAPRSAD IDNNLGVLYQ SSGRDADAER AFVRAVSKAP GHGQAHLNLG
MLLRSRHRLE EAERAIRIAV EQAPGDHAAL NALGLVLKDL GRYDEAEAAY RQALALEPGR
AEYRLNLANV LLHRNDWIAG LPLFEARHAP DLNGAFSDAP AVSFPQWQGE PIDGASLLIW
PEQGHGDQIQ LVRYVKKLRM LGAKRITLVC SAATQRLFAT LPEADAVVAR DRFDPAACPR
HDFWTCVWSI PVNLRESPAS IPATLPYLRA PRHAASKWDR LMPKGRLRVG LVWQGNPGHA
NDRVRSLPGL QTLAPLWDID GVTFVSLQKS ANEADLRAGI GDRFIVNLGN RTTDFADVAA
IVARLDLVIG VDTAVMHLSA ALGKPAWILL SNVGTDWRWS GAGTTSVWYP GVVTLFRQAA
TETDWSGVVA RVSQALSAMR AT