Gene Bcenmc03_1339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_1339 
Symbol 
ID6123017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010508 
Strand
Start bp1478876 
End bp1479385 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content71% 
IMG OID641637915 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001764636 
Protein GI170732689 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.427786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0741559 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCTG ACAAGCTGTC CCTCCGTCGA GAAATCGACG CCCTCTATGC CGGCCACCAC 
GCGTGGCTGC GCGGCTGGCT GAGCCGGAAG CTCGGTTGCG CGCACCGCGC GGCCGACCTG
GCGCACGACA CGTTCGTGCG CCTGCTCGCA CGCGACGAGC CGATCGGCGC CGACGAGCCG
CGCGCGTTCC TGACCACGGT CGCGCAGCGT GTGCTGAGCA ACCACTGGCG GCGCGAGCAG
ATCGAGCGCG CGTATCTCGA CGTGCTCGCG CAGCGCCCGG AAGCGGTTGC GCCGTCGCCG
GAAGAGCGGG CCGTCGTGGT CGAGACGCTG CTCGAGATCG ACCGGCTGCT CGACGGCCTG
CCGCCCGCGG CGAAGCGTGC GTTCCTGTCC GCACAGCTCG ACGGGCTCAC GCAGGTCGAG
ATCGCGCGCG AGCTCGGCGT GTCGCTCGCG ACGGTGAAGC GCTATCTCGT GAAGGCCGGC
ACGCAGTGCT TCTTCGCGAT GGCGGCCTGA
 
Protein sequence
MSADKLSLRR EIDALYAGHH AWLRGWLSRK LGCAHRAADL AHDTFVRLLA RDEPIGADEP 
RAFLTTVAQR VLSNHWRREQ IERAYLDVLA QRPEAVAPSP EERAVVVETL LEIDRLLDGL
PPAAKRAFLS AQLDGLTQVE IARELGVSLA TVKRYLVKAG TQCFFAMAA