| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1253 |
|---|
| Symbol | |
|---|
| ID | 6122931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 1373190 |
|---|
| End bp | 1374680 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641637827 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_001764550 |
|---|
| Protein GI | 170732603 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.425201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.218881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGA CCGCAACACA CGTCAGCCCG ACCGCTGTCT CTTCCTCCGC TTCGTCGTCC
GGCGAAGCCC CGCTCGCCGC GGACGACATC ACCGTCGTCG ACCAGAGCCT GCTCAAGCGC
GCCGTCAGCG CAATGGCCAT CGGCAATGCG ATGGAATGGT TCGACTTCGG CGTCTACAGC
TATATCGCCG TCACGCTCGG CAAGGTGTTC TTCCCGTCGA GCAGCCCGTC CGCGCAGTTG
CTGGCCACCT TCGGCACGTT CGCGGCCGCG TTCCTCGTGC GCCCGCTCGG CGGCATGGTG
TTCGGCCCGC TCGGCGACCG CATCGGCCGC CAGCGCGTGC TCGCCGCGAC GATGATCATG
ATGGCCGTCG GCACCTTCGC GATCGGCCTG ATCCCGAGCT ATGCGTCGAT CGGCATCATG
GCCCCGATCC TGCTGCTCGT CTCCCGCCTC GTGCAGGGCT TCTCGACCGG CGGCGAGTAC
GGCGGCGCCG CCACCTTCAT CGCCGAGTTC TCGACCGACA AGCGCCGCGG CTTCATGGGC
AGCTTCCTCG AATTCGGCAC GCTGATCGGC TATGTGCTGG GCGCAGGCGT CGTCGCGCTG
CTCACCGCGT CGCTGTCGCA GGAAGCGCTG CTGTCGTGGG GCTGGCGCGT GCCGTTCCTG
ATCGCCGGGC CGCTCGGCCT GATCGGTCTG TACATCCGGA TGAAGCTCGA GGAAACGCCG
GCGTTCAAGC GTCAGGCCGA AGAGCGCGAA GCGCAGGACA AGGCCGTGCC GAAGGCGCGC
TTCCGCGAGA CGCTGCTCGC CAACTGGCGT GCGCTGCTGC TGTGCGTCGG CCTCGTACTG
ATCTTCAACG TGACCGACTA CATGGTGCTG TCGTACCTGC CGAGCTTCAT GTCGTCGACG
CTGCACTTCG ACGAATCGCA CAGCCTCGTG CTGGTGCTGA TCGTGATGGT GCTGATGATG
CCGATGACGC TGTACGCCGG CCGCCTGTCG GACAAGGTTG GCCGCAAGCC GGTGATGCTC
GCCGGTTGCG TCGGCCTGCT GGTGCTGTCG ATCCCGTCGC TGATGCTGAT CCACACGGGC
ACCACGGCGT CGGTGTTCGC CGGCCTGCTG ATCCTCGGCG TGCTGCTGTC GTGTTTCACG
GGTGTGATGC CGTCGGCGCT GCCCGCGCTG TTCCCGACCG AGATCCGCTA CGGCGCGCTC
GCGATCGGCT TCAACGTGTC GGTGTCGCTG TTCGGCGGCA CGACGCCGCT GGTGACCGCG
TGGCTCGTCG ACGTGACGCA CAACCTGATG ATGCCCGCGT ACTATATGAT GGGCGCCGCG
CTGATCGGCA TCGTGTCGGT CGTCGCGCTC GCCGAAACCG CGCGCCAGCC GCTGAAGGGC
TCGCCGCCGG CCGTCGCGAC GCGCCGCGAA GCGCACCAGC TCGCGCGCCA GTTGCGCGAG
GACGACGACG AATCGGAGGT CTACGGCGTC GCGACTCCCG CCCGCGCGTA A
|
|---|
| Protein sequence | MTLTATHVSP TAVSSSASSS GEAPLAADDI TVVDQSLLKR AVSAMAIGNA MEWFDFGVYS
YIAVTLGKVF FPSSSPSAQL LATFGTFAAA FLVRPLGGMV FGPLGDRIGR QRVLAATMIM
MAVGTFAIGL IPSYASIGIM APILLLVSRL VQGFSTGGEY GGAATFIAEF STDKRRGFMG
SFLEFGTLIG YVLGAGVVAL LTASLSQEAL LSWGWRVPFL IAGPLGLIGL YIRMKLEETP
AFKRQAEERE AQDKAVPKAR FRETLLANWR ALLLCVGLVL IFNVTDYMVL SYLPSFMSST
LHFDESHSLV LVLIVMVLMM PMTLYAGRLS DKVGRKPVML AGCVGLLVLS IPSLMLIHTG
TTASVFAGLL ILGVLLSCFT GVMPSALPAL FPTEIRYGAL AIGFNVSVSL FGGTTPLVTA
WLVDVTHNLM MPAYYMMGAA LIGIVSVVAL AETARQPLKG SPPAVATRRE AHQLARQLRE
DDDESEVYGV ATPARA
|
|---|
| |