| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1165 |
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| Symbol | |
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| ID | 6122843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010508 |
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| Strand | - |
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| Start bp | 1270792 |
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| End bp | 1272627 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641637739 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001764462 |
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| Protein GI | 170732515 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.696575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.124604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCCA ACAGGAAACA GACGTCACGC AAGGGCTCCT GGCGCAGCGC CTTGCATACG
CTGCGACGTT TCGCTCGGTC GGGCGGCGCG CTGATGCCCG CGCGCGCCGT CGCGCCGCGC
CGCGACGACT CCGTGCGCAA CTGGCTGGAA CAGACGGTCG GCACGGTGGA TTTCCTCGCC
CACGTCGACC GCGAGCTGCG CTTTCTGTAC GTGTCCGACG CCAGCCTGCG CTTCATCGGC
TACCACCGCG ACTACCTGCA TACGCTAACG TTGCGCGACC TGATCGCCGA ACAGGATACC
CCGGCGCTCG AAGGCCTGCT CGCCCGCGCC GCACGCTCCG GCCAGGTCGA GAAGGCGACG
ATGTGCATCG TCAAGTCGCT CACCTACCCG CTGGACGTCG AGATCCGCGC GTTCAAGAGC
CGCCACCACG GCGTCGACGG CTTCGCGATC GCGGCGTTCG ACGTATCGTC GTGGCGCGCG
CTCGAGGCTC GCCTGACGTA CGAAATGCAC CACGACCCGA TGACGGGGCT CGACAACCTG
TCCGCGCTCG TGCCGGCGCT GATGGCCGCG CAGCAGACGG CCGACGAGGA CGGCACCTGC
GCGGCGCTGC TGCTGCTCGA CCTCGACGAC TATCAGCGGA TCAACCGCGC GCTCGGCTAT
GACGCCGGCG ACATGCTGCT GCGCGAGACC GCGCAGCGGC TGAAGGCGCT CGTCACGCCG
AACGAGCGGC TCGCGCGGGT CGCGAGCGAC AAGTTCGCGG TCGTACTGGG CGCGGCGGAC
CGCGCGCAGG CGAGCCATGC CGCCGATGCG CTCGCACGCC GGCTGCAGGC CGCGGTGCGC
GAGCCTTATG TATTCCAGGG GCAGACCGTG CACCTGTCCG CGAGCATCGG CATCGCGCTC
TATCCCGACG AACGTGCCGC GCCGCACCGG GCGCAGCATC ACAGCCCGCT GCTGCGCCGC
GCCGACCACG CGCTCGCGCA GGCGAAGGCG TCGGGCGGCA ACGCGCTCGC ATTCCATGCG
CCCGTCGACG ATCCGGCCGA CGCCGAACGG CTCAAGCTCG AGGCGGATCT GTACGACGGC
GTGCGCAACG GCGAGTTTTC GCTCCATTTC CAGCCGATCA CGCGCAGCCA GTCGGGCGCG
GTGGTCGGCG TCGAGGCACT GATCCGCTGG CGCCATCCGG TGCACGGCCT CGTGCCGCCG
GCCACCTTCA TCCCGCTCGC CGAATCGATC GGCCTGATCA ACTACCTCGG CAACTGGGTG
CTCAAGGCCG CGTGCATGCA GCTCGTCGCC TGGGACGGCC AGGGGCTCGC GCTGCAATAC
GTGGCGGTCA ACGTGTCGCC GCAGCAGTTC CGCGACCCGC GCTTCACGCA GAGCGTGCGC
GAGGCGATCG CGCTGACCGG CATCGACCCG CGCCGCATCG TGCTCGAAAT CACCGAAAGC
CTGCTGATGC ACGATCCCGC GCACGCGAAA ATCCTGCTCG AGGAGCTGAC CGGTCTCGGC
ATCCGCTTCG CGATCGACGA TTTCGGCACC GGCTATTCGA GCCTCGCCTA TCTGCAGCGC
TTCCCGCTCG CGAAGCTGAA GATCGACCGC AGTTTCGTCG AGAACCTGCT GACGTCGCGC
AACGACCGCG CGATCGTGTC GGCGGTGGTC GGCCTCGCGC AAACACTGGA TCTCGAGCTC
GTCGCCGAAG GCGTCGAGAC CGAGGCGCAG CGCGCGCTGC TGTCGGAGAT GGGCTGCAAT
CACATCCAGG GCTGGCTCGT CTGCCAAGCG CTGCCGTCCG AGGAGCTCGC GCGGCGCTTC
GAGGCGCAGC AGCTGCACCT GCACGCCGCC GCCTGA
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| Protein sequence | MEANRKQTSR KGSWRSALHT LRRFARSGGA LMPARAVAPR RDDSVRNWLE QTVGTVDFLA
HVDRELRFLY VSDASLRFIG YHRDYLHTLT LRDLIAEQDT PALEGLLARA ARSGQVEKAT
MCIVKSLTYP LDVEIRAFKS RHHGVDGFAI AAFDVSSWRA LEARLTYEMH HDPMTGLDNL
SALVPALMAA QQTADEDGTC AALLLLDLDD YQRINRALGY DAGDMLLRET AQRLKALVTP
NERLARVASD KFAVVLGAAD RAQASHAADA LARRLQAAVR EPYVFQGQTV HLSASIGIAL
YPDERAAPHR AQHHSPLLRR ADHALAQAKA SGGNALAFHA PVDDPADAER LKLEADLYDG
VRNGEFSLHF QPITRSQSGA VVGVEALIRW RHPVHGLVPP ATFIPLAESI GLINYLGNWV
LKAACMQLVA WDGQGLALQY VAVNVSPQQF RDPRFTQSVR EAIALTGIDP RRIVLEITES
LLMHDPAHAK ILLEELTGLG IRFAIDDFGT GYSSLAYLQR FPLAKLKIDR SFVENLLTSR
NDRAIVSAVV GLAQTLDLEL VAEGVETEAQ RALLSEMGCN HIQGWLVCQA LPSEELARRF
EAQQLHLHAA A
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