| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1006 |
|---|
| Symbol | rpsA |
|---|
| ID | 6122686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | + |
|---|
| Start bp | 1114065 |
|---|
| End bp | 1115795 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641637576 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001764305 |
|---|
| Protein GI | 170732358 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAATC AGATTTTTAT GTCCGACCTG CAAACCTCCA CCCCGAATAC CGAATCCTTT
GCGGCTCTGT TCGAAGAGTC GCTGACCCGC CAAGACATGC GCGCCGGCGA AGTGATTTCC
GCCGAAGTCG TGCGCGTCGA CCACAACTTC GTGGTCGTCA ATGCAGGCCT GAAGTCCGAG
GCTTACATTC CGATCGAGGA ATTCCTGAAC GATCAGGGCG AGGTAGAGGT GCAGTCGGGC
GATTTCGTGT CCGTCGCGAT CGACGCACTC GAAAACGGCT ACGGCGACAC GATCCTGTCG
CGCGACAAGG CGAAGCGCCT TGCATCGTGG CTGTCGCTGG AAAAGGCGCT CGACAACAAC
GAGCTCGTCA CCGGCACGAT CACCGGCAAG GTGAAGGGCG GCATGACCGT GATGGTCAAC
GGCATCCGCG CGTTCCTGCC GGGTTCGCTG GTCGACACGC GTCCGGTCAA GGACACGACC
CCGTACGAAG GCAAGACGCT CGAGTTCCGT GTGATCAAGC TCGATCGCAA GCGTAACAAC
GTCGTGCTGT CGCGTCGTGC AGTGATCGAA GCAACGCAAG GCGAAGAGCG CGCGAAGCTG
CTCGAGACGC TGAAGGAAGG CGCGATCGTC AACGGCGTGG TCAAGAACAT CACCGATTAC
GGCGCGTTCG TCGACCTCGG CGGTATCGAC GGCCTGCTGC ACATCACCGA CATCGCATGG
CGTCGTGTGC GTCACCCGAG CGAAGTCCTG TCGGTTGGCC AGGAAGTCAC CGCGAAGATC
CTCAAGTTCG ACCAAGAGAA GAACCGCGTC TCGCTGGGCA TCAAGCAACT GGGCGACGAT
CCGTGGGAAG GCATCTCGCG CCGTTACCCG TCGGGCACGC GCCTGTTCGG CAAGGTCACG
AACATCACCG ACTACGGCGC ATTCGTCGAA GTGGAATCGG GCATCGAAGG CCTCGTCCAC
GTGTCGGAAA TGGACTGGAC CAACAAGAAC GTTGCGCCGT CGAAGGTTGT CCAGCTGGGC
GACGAAGTCG AAGTCATGGT CCTCGAGATC GACGAAGACC GTCGTCGTAT CAGCCTCGGC
ATGAAGCAGT GCAAGCCGAA TCCGTGGGAT GACTTCAGCC GCAACTTCAA GAAGGGCGAC
AAGATCACGG GCGCAATCAA GTCGATCACC GACTTCGGCG TGTTCATCGG TCTGCCGGGC
GGCATCGACG GCCTGGTCCA CCTGTCGGAC CTGTCGTGGA GCGAAGCCGG CGAAGAAGCC
GTTCGCAAGT ACAAGAAGGG CGACGAAGTC GAAGCAATCG TGCTCGGTAT CGACGTCGAG
AAGGAACGCA TTTCGCTCGG CATCAAGCAG CTCGAAGGCG ACCCGTTCAG CAACTACGTT
GCAATGAACG ACAAGGGCTC GATCGTCGAC GGCGTCGTGA AGACGGTCGA TGCGAAGGGT
GCGGTCGTCA CGCTGACGGG CGACATCGAA GGCTACCTGC GTGCGTCGGA AATCTCGCAG
GATCGCGTCG AAGATGCACG CAACGTGCTG AAGGAAGGCG ACAAGGTCAA CGCGATGGTG
ATCAACATCG ATCGCAAGTC GCGCGGCATC AACCTGTCGA TCAAGGCGAA GGATTCGGCT
GAACAACAGG AAGCGATCCG CGGCCTGCAG TCGGACTCGA GCGCTGCTGC GACCGGTACG
ACCAACCTCG GCGCGCTGCT GAAGGCGAAG CTCGACGGCC AGAACCAGTA A
|
|---|
| Protein sequence | MHNQIFMSDL QTSTPNTESF AALFEESLTR QDMRAGEVIS AEVVRVDHNF VVVNAGLKSE
AYIPIEEFLN DQGEVEVQSG DFVSVAIDAL ENGYGDTILS RDKAKRLASW LSLEKALDNN
ELVTGTITGK VKGGMTVMVN GIRAFLPGSL VDTRPVKDTT PYEGKTLEFR VIKLDRKRNN
VVLSRRAVIE ATQGEERAKL LETLKEGAIV NGVVKNITDY GAFVDLGGID GLLHITDIAW
RRVRHPSEVL SVGQEVTAKI LKFDQEKNRV SLGIKQLGDD PWEGISRRYP SGTRLFGKVT
NITDYGAFVE VESGIEGLVH VSEMDWTNKN VAPSKVVQLG DEVEVMVLEI DEDRRRISLG
MKQCKPNPWD DFSRNFKKGD KITGAIKSIT DFGVFIGLPG GIDGLVHLSD LSWSEAGEEA
VRKYKKGDEV EAIVLGIDVE KERISLGIKQ LEGDPFSNYV AMNDKGSIVD GVVKTVDAKG
AVVTLTGDIE GYLRASEISQ DRVEDARNVL KEGDKVNAMV INIDRKSRGI NLSIKAKDSA
EQQEAIRGLQ SDSSAAATGT TNLGALLKAK LDGQNQ
|
|---|
| |