| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_0922 |
|---|
| Symbol | |
|---|
| ID | 6122602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 1019376 |
|---|
| End bp | 1020497 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641637486 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001764221 |
|---|
| Protein GI | 170732274 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.219389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCGG ATACCGACTT CGCCCACATG CAGCGCGCGC TCGCGCTCGC GGCGCGCGGC
ATGTACACGA CCGCGCCGAA TCCGCGCGTC GGCTGCGTGA TCGTCAAGGA CGGCGACGTG
ATCGGCGAAG GCTTCACGCA GCCGGCCGGC CAGGACCACG CGGAAGTGCA GGCGCTCAAG
GACGCGCGTT CGCGCGGCTA CGACGTCGCG GGCTCGACCG TCTACGTGAC GCTCGAACCG
TGCAGCCATT TCGGCCGCAC GCCGCCGTGC GCGAACGCGC TGATCGACGC GCGCGTCGCG
AAGGTCGTCG CCGCGATGGA AGACCCGAAC CCGCAGGTGT CGGGGCGCGG CCTCGGCATG
CTGCGCGACG CGGGTATCGA CGTGCGCTGC GGGCTGCTCG CGCATGAAGC CGGCGAGCTG
AACATCGGCT TCGTGTCGCG GATGACGCGC GGCCGCCCGT GGGTGCGGAT GAAGACCGCC
GCGTCGCTCG ACGGCCGCAC CGCGCTGCCG TCCGGCGAAA GCCAGTGGAT CACCGGCGAG
GCCGCGCGCC TCGACGGGCA CGCATGGCGC GCCCGGGCCT GCGCGATCCT CACCGGTATC
GGCACCGTGC GCGAGGACAA TCCTCTGCTG ACCGTGCGCG GCATCGACAC GCCGCGCCAG
CCGCAACGCA TCCTGGTGGA CAGCCGCCTC GACCTGCCGC TCGACGCGCG GCTGCTCGAA
GGCGCGCCGT TGCTGATCTT CTGCGGCCGG CTCGACGCCG CCGGCGAACT GCGCGCGAAC
GTGCTGAAGT CGCGCGGCGC GGAAATCGTG CCGCTCGCGA ATGCGCACGG CAAGGTCGAC
CTGCCCGCGA TGCTGGCGGC GCTCGGTGCG CGCGGCGTCA ACGAGCTGCA CGTCGAGGCC
GGCCACAAGC TGAACGGTTC GCTGCTGCGC GAACGCTGCG TCGACGAATT GCTGGTGTAT
CTGGCGCCGA GCCTGCTGGG CGCCGACGCG GCCGGCATGT TCGATCTCGC CGCGCCGGCC
AGCCTCGAGG CGCGCACCCG GCTGTCGTTC CACGGTATCG AGCGGATCGG CGACGACCTG
CGCATCCTCG CGCGTGTCGC ACCGACCGAC ACGTCTCACT GA
|
|---|
| Protein sequence | MFSDTDFAHM QRALALAARG MYTTAPNPRV GCVIVKDGDV IGEGFTQPAG QDHAEVQALK
DARSRGYDVA GSTVYVTLEP CSHFGRTPPC ANALIDARVA KVVAAMEDPN PQVSGRGLGM
LRDAGIDVRC GLLAHEAGEL NIGFVSRMTR GRPWVRMKTA ASLDGRTALP SGESQWITGE
AARLDGHAWR ARACAILTGI GTVREDNPLL TVRGIDTPRQ PQRILVDSRL DLPLDARLLE
GAPLLIFCGR LDAAGELRAN VLKSRGAEIV PLANAHGKVD LPAMLAALGA RGVNELHVEA
GHKLNGSLLR ERCVDELLVY LAPSLLGADA AGMFDLAAPA SLEARTRLSF HGIERIGDDL
RILARVAPTD TSH
|
|---|
| |