| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_0459 |
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| Symbol | |
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| ID | 6122140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010508 |
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| Strand | - |
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| Start bp | 497489 |
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| End bp | 501433 |
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| Gene Length | 3945 bp |
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| Protein Length | 1314 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641637016 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001763759 |
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| Protein GI | 170731812 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.821669 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCA TCCTCAACGT GCTGACTCAT CCGCGTACGC TCTCGATCGT CGGGATCGTC
GCGCTAGCGG CCATTCTGTT CATCGTCGCC GACATGCTGC AGTTGCCGCT CCTGTGGGCG
GCGCTCGCGT TCGCGGCGGT TCTCGCGCTG TGGCTCGTGG TCGCGCTATG GCGCCGCTGG
CGCGTGAAGC GCGCGAACCA GCAGCTCGGC CAGGTGCTGG AAGAGCAGGC GGAAACCGGC
AAGATCGCCG CACCGGCCGC CGCCGCGCTC GCGCCGGACG CGAAGACGGC CGACCTCGAC
GTGCTGCGCA CGCGCCTGTC GGATGCGGTG AAGACGATCA AGACGTCGAA GATCGGCCAG
GTGTCGGGCG GCTCCGCGCT GTACGAACTG CCGTGGTACA TCGTGATCGG CAACCCGGCC
GCGGGCAAGA GCAGCGCCGT GCTCAACTCC GGCCTGCAGT TCCCGTTCGC GGACAAGAAC
AGCGCGGTGA TCCATGGCAT CGGCGGCACG CGTAACTGCG ACTGGTTCTT CACGACCGAA
GGGATCCTGC TCGACACGGC CGGCCGCTAT TCGGTGCACG AGGAAGACCG CAGCGAGTGG
CTCGGCTTCC TCGGGCTGCT CAAGCGCTAC CGTCCGAAGG CGCCGATCAA CGGCATCATC
GTCACGGCCA GCATCGCCGA ACTCACCGGC AATCGCCCCG AATTCGCGAT CAACCTCGCG
AAGAACCTCC GTCAGCGCGT TCAGGAGCTG ACCGAAAAGC TGGAAGTGTT CGCGCCGGTC
TACGTGATGT TCACGAAGGC CGACCTGATC ACCGGCTTCA CCGAATTCTT CAGCAGCAGC
GACAAGCACG AGTACGACCG CGTGTGGGGC GCCACCCTGC CCTACGAGCC CGACGACAAG
CGTGACGTCG TCGCCCAGTT CGACACGCAC TTCGAGGAGC TCTACGAAGG GCTGAAGGAA
ATCAGCGTCG CGCAACTGTC GCTGTCGCGC GGCAACCAGC TGTCGCCGGG CCAGCTGAGC
TTCCCGCTCG AATTCTCGAC GATCAAGCCG TCGCTGCGCG CGTTCCTCGC GACGCTGTTC
GAGAACAACC CGTTCCAGTA CAAGCCGATC TTCCGCGGCT TCTACTTCAC CAGCGCGCTG
CAGGAAGGCG AAACCAACAG CGCGGCCGCG CAGCGCATCG CGCACCGCTT CGGCCTCGAC
GGCAGCGCGC TGCCGAAACC GCACAGCGCG TTCTCGAAGA ACGGCTTCTT CCTGCGCGAC
CTGTTCTCGA AGGTGATCTT CGCGGACCGT CAGACGGTGC GCCAGTTCGC GAGTCCGACC
AAGACGCGGC TGCGCTACGC AACCTTCTTC GGCTTCGTCG CGGCGCTCGC GCTCGCGCTG
GGCGGCTGGA CCTGGTCGAC GATCGGCAAC CAGCAGCTCG TCGCGAACGT GCAGGCCGAC
CTCGACAACG TCACGCGCCT GCAACAGGGC CGCAACGACC TGCAGTCGCG CCTGCAGGCG
ATGGACATCA TCGAGGACCG GATCGAGCAG CTCGAACAGT TCCGCCGCGA CAAGCCGCTG
TCGGTGTCGC TCGGCCTGTA CCAGGGCGAC CGTCTCGAGC AGCACCTGCT GACCGAGTAC
TACAACGGCG TGCGCCAGAT CCTGCTGGCC CCGGTGTCGC AGAACCTCGC GTCGTTCATG
AAGGACGTGA ACGCGCACCC CGAGCAGCTC GTGCCGATGA CGCGCCCGCC CGAATCGGGC
GCCGTGCAGG GCGGCACGCT GCCGGTCTCG ACGAACGCGG CAGGCGCCGC GCCGCAAGCG
GGCGCCATGC TGGCCGCGTC CGGCACCGCG CCGGCCGCCG CCCCGCAACA GGCGGCCACG
CCGCAGGGCG GCCTCTACAG CGACGCGTCG CCGACCAACG TGCAGGACGC GTACAACGCG
CTGAAGACCT ACCTGATGCT GTCCGACAAG CGTCACGTCG AACAGGCGCA CCTGACCGAC
CAGCTCGCCC GCTTCTGGCG CGGCTGGCTC GAGACGAATC GCGGCAACAT GCCGCGCGAC
GAGATGATCC GGAGCGCCGA GCGCATGATC TCGTTCTACC TGTCGCGCGT GAACGACGAC
GACTGGCCGA TGATCGACGC GAACCTCGCG CTCGTCGACC AGACCCGCGA GAATCTGCGC
CGCGTCGTAC GCGGCATGCC GGCCCGCCAG CGCGTGTACG AGGAAATCAA GGCCCGTGCG
TCGACCCGCT TCGCGCCGAT GACCATCGCG CGTATCGTCG GCGACGGCAA CCAGGGGCTC
GTGGCAGGCA GCTACGCGAT TCCGGGCACG TTCACGCGCG AAGCGTGGTT CGACTACGTG
CAGCCGGCGA TCCGCGATGC GGCGACCAAG GAGCTGCAGG CGAAGGACTG GGTGCTCAAC
ACGTCGACGC AGGACGACCT GACGCTCGAG GGCAGCCCCG AGCAGATCCA GAAGACGCTC
GTCGGCATGT ACAAGACCGA GTACGCGCAG CACTGGCAGA AGTTCATGCA GGGCATCGCG
GTACAGGGCT TCACCAGCTT CGGCCAGGCC GTCGACGGGA TGAACCGCTT GGGCGACCCG
CAGGATTCGC CGATCCGCAA GATCCTCGAG ACCGCGTACG ACCAGACGTC GTGGGACAAC
CCGTCGCTCG CGAACGTGAC GATCAAGAAG GCGCAGACAG GCGTCGTGAA CTGGGTCAAG
CAACTGTTCA CGCACTCGCA GGCCGGCCAG ATGGCGGCAG CCAACATCGA CATCAACGGC
AATCCGGCCG AGGTGCCGAT GGGCCCGATC GGCCAGGAAT TCGTCGGGCT CGCGCGGATC
GTCGCGACGC ATGACGGCAC GTCGATGCTG AAGGGCTACA TGGAGTCGCT GTCGAAGGTC
CGCACGCGCT TCAACGTGAT CAAGAACCAG GGCGACCCGG GGCCGGGCGC GCGCCAGCTG
ATGCAGCAGA CGCTCGACGG CAACGGTTCG GAACTCGCCG ATTCGCTCAA GCTCGTCGAC
GAGCAGATGC TGACGGGCCT GACCGATTCG CAACGCAAGT CGCTGCGCCC GCTGCTGGTG
CGGCCGCTGA TGCAGGCGTT CGCGGTCGTG ATCCAGCCGG CCAGCGCCGA AGTCAACAAG
GTGTGGAACG CGCAGGTCTA CCAGCCGTTC CAGAGCTCGC TCGCGACCAA GTACCCGTTC
GCGGCGAACG CGAAGGTCGA GGCCGGCGCC GGCGAGATCG CGCAGGTGTT CGGCCCGGAC
GGCTCGATCG CGAAGTTCGT CGGCACGACG CTCGGGCCAC TCGCGGTGCG CCGCGGCGAC
ACGCTCGCCG CCCGCACGTG GGGCGACATG GGCATCGGGC TCACGCCGGA CTTCACGAAC
GGTTTCGCAC GCTGGGTCGC GCCGCTCGCG GGCGGCGCCG CCGGCAGCGC GGCCGCGTCG
GCCGAGCCGC AGACCGTGTT CCAGATCCTG CCGCAACCGA GCACGGGCAC GACGGAATAC
ACGATCGCGA TCGACGGCCA GCAGCTGCGC TACCGCAACA CGCCGCCGCA GTGGACCAAC
TTCGTGTGGC CGAACCCGCA GGGCGCGCCG GGCGCGACGC TGTCCGCGAC GACCTTCGAC
GGCCGCACGG TGCAGCTCGT CAACGAGCCG GGCCGCTACG GTCTCGAGAA GCTGATCAAC
TCGGCGCAGC GCAAGCGCCG TCCGGACGGC ACCTTCGACC TGACGTGGGC ACAGGGCAGC
GTGAACGTGT CGGTGACGAT GCGCATCATC AGCACGTCGC AACCGTCGGC CGGTGGCGGC
GACCAGCCGC AGCAGCAGAG CCTGCGCGGC CTGCAGCTGC CGTCGTCGGT CGCCGACGCG
AGCGCGGGCG CCGCGCAGAA CGCGACGCAA GCCGGCACCG GTACGCCGGG CGCCGCGCCG
GCCGTCGCGG CCGCCAACGC AACGAATGCA CAGAGGGCGC AATGA
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| Protein sequence | MQRILNVLTH PRTLSIVGIV ALAAILFIVA DMLQLPLLWA ALAFAAVLAL WLVVALWRRW
RVKRANQQLG QVLEEQAETG KIAAPAAAAL APDAKTADLD VLRTRLSDAV KTIKTSKIGQ
VSGGSALYEL PWYIVIGNPA AGKSSAVLNS GLQFPFADKN SAVIHGIGGT RNCDWFFTTE
GILLDTAGRY SVHEEDRSEW LGFLGLLKRY RPKAPINGII VTASIAELTG NRPEFAINLA
KNLRQRVQEL TEKLEVFAPV YVMFTKADLI TGFTEFFSSS DKHEYDRVWG ATLPYEPDDK
RDVVAQFDTH FEELYEGLKE ISVAQLSLSR GNQLSPGQLS FPLEFSTIKP SLRAFLATLF
ENNPFQYKPI FRGFYFTSAL QEGETNSAAA QRIAHRFGLD GSALPKPHSA FSKNGFFLRD
LFSKVIFADR QTVRQFASPT KTRLRYATFF GFVAALALAL GGWTWSTIGN QQLVANVQAD
LDNVTRLQQG RNDLQSRLQA MDIIEDRIEQ LEQFRRDKPL SVSLGLYQGD RLEQHLLTEY
YNGVRQILLA PVSQNLASFM KDVNAHPEQL VPMTRPPESG AVQGGTLPVS TNAAGAAPQA
GAMLAASGTA PAAAPQQAAT PQGGLYSDAS PTNVQDAYNA LKTYLMLSDK RHVEQAHLTD
QLARFWRGWL ETNRGNMPRD EMIRSAERMI SFYLSRVNDD DWPMIDANLA LVDQTRENLR
RVVRGMPARQ RVYEEIKARA STRFAPMTIA RIVGDGNQGL VAGSYAIPGT FTREAWFDYV
QPAIRDAATK ELQAKDWVLN TSTQDDLTLE GSPEQIQKTL VGMYKTEYAQ HWQKFMQGIA
VQGFTSFGQA VDGMNRLGDP QDSPIRKILE TAYDQTSWDN PSLANVTIKK AQTGVVNWVK
QLFTHSQAGQ MAAANIDING NPAEVPMGPI GQEFVGLARI VATHDGTSML KGYMESLSKV
RTRFNVIKNQ GDPGPGARQL MQQTLDGNGS ELADSLKLVD EQMLTGLTDS QRKSLRPLLV
RPLMQAFAVV IQPASAEVNK VWNAQVYQPF QSSLATKYPF AANAKVEAGA GEIAQVFGPD
GSIAKFVGTT LGPLAVRRGD TLAARTWGDM GIGLTPDFTN GFARWVAPLA GGAAGSAAAS
AEPQTVFQIL PQPSTGTTEY TIAIDGQQLR YRNTPPQWTN FVWPNPQGAP GATLSATTFD
GRTVQLVNEP GRYGLEKLIN SAQRKRRPDG TFDLTWAQGS VNVSVTMRII STSQPSAGGG
DQPQQQSLRG LQLPSSVADA SAGAAQNATQ AGTGTPGAAP AVAAANATNA QRAQ
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