Gene Bcenmc03_0285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_0285 
Symbol 
ID6121968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010508 
Strand
Start bp313861 
End bp315066 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content71% 
IMG OID641636834 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001763587 
Protein GI170731640 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.140483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000766037 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGCCCGACC ACAATCTGGA CAAACTGAAA ATCGACCGGC GTCCGATCGC ACCGGTGCCG 
CGTCGGCGCC GGTGGGCCCG CTACGCGGTC GCCGCCGCGC TGATCGTCAT CGCGATCGTC
GCCGGCCTCG CCCTCACCGG CCGGCCGACC GTCGACACCA CCTCCGTCAC GTCCGCCTAC
CCGTACCAGA ACGACACGCA GCTCAATGCG ACCGGCTACG TCGTGCCGCA GCGCAAGGCC
GCGGTCGCGT CGAAGGGTCA GGGGCGCGTC GAATGGCTCG GCGTGCTCGA AGGCACGCGC
GTGAAGCAGA ACGAGATCAT CGCGCGCCTC GAAAGCAACG ACGTGCAGGC GTCGCTTGCC
CAGGCGCGCG CGCAGGTGCA GGTCTCCCGC GCCAACCTCG GCGTCGCGCA GGCCGAACTG
AAGGACGCCG AGATCGCATT GCGCCGCACG TCCGCGCTCG CGCCGAAGGG CGCGGTGCCG
GCCGCGCAGC TCGATACCGA CACGGCGCGC GTGAACAAGG CGCGCGCGAC GCTCGACAGC
GACCAGGCCG CGATCGTGTC GGCCGAGGCG AATGCGCAGG CCGCGCAGGT GGCGGTCGAC
CAGACGGTGA TCCGCGCGCC GTTCGACGGC ATCGTGCTCG CCAAACATGC GAACGTCGGC
GACAACATCA CGCCGTTCTC GTCCGCGTCG GACAGCAAGG GCGCGGTCGT GACGATCGCC
GACATGGAGA CGCTCGAGGT CGAGGCCGAC GTCGCCGAAT CGAACATCGC GAAGATCCGC
GCGGAGCAGC CGTGCGAGAT CCAGCTCGAT GCGCTGCCCG ACCTGCGCTT CGCGGGCCGC
GTGTCGCGCA TCGTGCCGAC CGTCGACCGC TCGAAGGCCA CCGTGCTCGT GAAGGTGCGC
TTCGTCGACC GCGACGAGCG CGTGCTGCCC GACATGAGCG CGAAGATCGC ATTCCTGTCG
AAGCCCGCGA CGCCGCAGGA CCGGCAGCCG GTGACCGCCG TGCAGGCGAG CGCCGTGGTC
GAGCGCGACG GCCGGCCGGT CGTGTTCGTC GTGAAGGACG ACGCCGTGCA TGCGGTGGCC
GTGACGAAGG GCACGCGGAT CGGCGAGCTC GTCGCGGTGC GCGGCGTGAA GCCCGGCGAC
ACGGTCGTGC TCGCGCCGGG CGCGAAGCTG AAGGACGGCG CGAACGTGAC CGTCGCGAAG
AAGTAG
 
Protein sequence
MPDHNLDKLK IDRRPIAPVP RRRRWARYAV AAALIVIAIV AGLALTGRPT VDTTSVTSAY 
PYQNDTQLNA TGYVVPQRKA AVASKGQGRV EWLGVLEGTR VKQNEIIARL ESNDVQASLA
QARAQVQVSR ANLGVAQAEL KDAEIALRRT SALAPKGAVP AAQLDTDTAR VNKARATLDS
DQAAIVSAEA NAQAAQVAVD QTVIRAPFDG IVLAKHANVG DNITPFSSAS DSKGAVVTIA
DMETLEVEAD VAESNIAKIR AEQPCEIQLD ALPDLRFAGR VSRIVPTVDR SKATVLVKVR
FVDRDERVLP DMSAKIAFLS KPATPQDRQP VTAVQASAVV ERDGRPVVFV VKDDAVHAVA
VTKGTRIGEL VAVRGVKPGD TVVLAPGAKL KDGANVTVAK K