| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4928 |
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| Symbol | trmE |
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| ID | 6119309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5931494 |
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| End bp | 5932855 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641636513 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001763272 |
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| Protein GI | 170729246 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0035842 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000248868 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACAACAG ATACTATCGT GGCACAGGCA ACCGCTCCCG GGCGTGGCGG TGTAGGTATC
ATTCGGATCT CAGGAGACAA GGCCAGTGAT GTTGCTATGG CTGTGTTAGG TCACCTGCCA
AAGACACGAT ATGCCGATTA CTGTGACTTT AAAGATGCCG AAAACGCTGT AATAGACCAA
GGTATCGCCC TCTATTTTCA AGGCCCGAAC TCCTTTACCG GTGAAGATGT TCTAGAACTA
CAGGGACACG GCGGCCAGAT AGTCCTAGAT ATGCTGATTA AGCGTGTGAT GGAAGTGGAC
GGTGTACGTA TTGCTAAACC GGGTGAGTTC AGCGAACAAG CCTTTATGAA CGATAAGATG
GATCTGACCC AAGCGGAAGC GATTGCCGAT CTTATCGATG CCACCAGCGA GCAAGCGGCT
AAAAGCGCCC TAAACTCACT ACAAGGCGAG TTCTCGGTGC AGATACATGA ACTCGTAGAG
CAGGTCACTA ACCTGCGCTT ATACGTCGAA GCAGCCATCG ACTTCCCTGA CGAGGAGGTC
GACTTCCTCT CTGACGGTAA GATTGCAGGC TCACTTAATC GCATAATCAC TAAACTCGAC
AGCGTACAAG CCAGTGCCAA GCAAGGCGCC ATCATACGTG AAGGGATGAA AGTGGTGATT
GCTGGTCGTC CCAATGCAGG TAAATCTAGT CTGCTGAATG CATTGGCAGG CAAAGAGTCC
GCTATTGTCA CCGAAATCGC CGGTACCACA CGTGATGTCC TACGTGAGCA TATCCACCTA
GATGGTATGC CGCTGCATAT TATCGACACA GCAGGCCTTC GTGATACCGA TGATACCGTC
GAGATGATAG GTATTGAGCG CGCCTGGGCT GAGATTGAGA CCGCCGATCA GGTACTCTTT
ATGGTCGATG GCACCACAAC TGATGCGGTC GATCCCCGCG AGATCTGGCC AGACTTTATC
GACCGTCTAC CTAAAAATTT AGGGATCACT GTAGTGCGTA ACAAAGCCGA TATCACTGGG
GAGCCTTTAA CCGTAACCCA AGATCATGGC CACAGCGTAT TTAAGATCTC AGCCAAAACA
GGCTTAGGCG TTGAATCACT GCAACAGCAC CTTAAATCAT TAATGGGCTA CCAGAGTAAC
CTTGAAGGTG GCTTTATCGC ACGACGTCGT CACCTAGAAG CCCTAGATCT TGCCAGCAGC
CATCTGATGA TAGGCAAAGA GCAGTTAGAG GTCTATTTAG CGGGTGAACT GCTCGCCGAA
GAGTTAAGGA TGACCCAGAT GGCCTTGTCT GAGATTACCG GAAAGTTCAC CTCTGATGAC
CTACTCGGCA AGATCTTCAG CAGCTTCTGT ATCGGTAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKASD VAMAVLGHLP KTRYADYCDF KDAENAVIDQ
GIALYFQGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEVD GVRIAKPGEF SEQAFMNDKM
DLTQAEAIAD LIDATSEQAA KSALNSLQGE FSVQIHELVE QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAG SLNRIITKLD SVQASAKQGA IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTDDTV EMIGIERAWA EIETADQVLF
MVDGTTTDAV DPREIWPDFI DRLPKNLGIT VVRNKADITG EPLTVTQDHG HSVFKISAKT
GLGVESLQQH LKSLMGYQSN LEGGFIARRR HLEALDLASS HLMIGKEQLE VYLAGELLAE
ELRMTQMALS EITGKFTSDD LLGKIFSSFC IGK
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