| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4901 |
|---|
| Symbol | |
|---|
| ID | 6119282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5896681 |
|---|
| End bp | 5897214 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641636486 |
|---|
| Product | F0F1 ATP synthase subunit delta |
|---|
| Protein accession | YP_001763245 |
|---|
| Protein GI | 170729219 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0712] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) |
|---|
| TIGRFAM ID | [TIGR01145] ATP synthase, F1 delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00369053 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.260895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAA TAACCACCAT CGCTCGTCCT TACGCAAAGG CAGCTTTTGA TTTTGCTATT
GAAAAGAACG CAGTTGATAG TTGGGCAGAG ATGCTGAACT TCGCGGCCAT GGTCAGTGAA
AACGAAACCA TGAAGCCACT GCTATCTGGC TCTTTAGCCA GCCACCAGCT TGCAGAACTC
TTTATTGGAG TTTGTGGCGA GCAGGTCAAT GAGCAAGGTC AAAACCTGTT AAAGGTAATG
GCTGAAAACG GTCGTTTAGA AACACTACCT GCTGTTTCTC AACTTTTTGT TGAGATGAAG
CATGAATGGG CAAAAGAGAT TGAAGCTAAT GTAGTTTCAG CCACTGAGCT TAGTTCAGAG
CAGCAACAGG AAATTAGTGT TTCTCTAGAG AAACGTCTCA CACGCAAAGT TAAGCTTAAT
TGCAGCATAG ATGCCAGCCT TATTGCTGGA CTAATTATCA CGGCAGGAGA CCTAGTCATT
GATGGCTCGG TCCGCGGAAA AGTTTCGCGT CTGTCTGATT CGCTGCAATC GTAA
|
|---|
| Protein sequence | MAEITTIARP YAKAAFDFAI EKNAVDSWAE MLNFAAMVSE NETMKPLLSG SLASHQLAEL
FIGVCGEQVN EQGQNLLKVM AENGRLETLP AVSQLFVEMK HEWAKEIEAN VVSATELSSE
QQQEISVSLE KRLTRKVKLN CSIDASLIAG LIITAGDLVI DGSVRGKVSR LSDSLQS
|
|---|
| |