Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4850 |
Symbol | |
ID | 6119227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5839763 |
End bp | 5840920 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641636431 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001763194 |
Protein GI | 170729168 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAA TATTATCGTT TGCATTTATT TTACTTAGCG TCTCTCTTTT GATCTTGGTA AGTAAAGAGA AATCTCTATC TGACGGTCTT GTTGTTGATA CTCATGTTGT TTCAGAAGAT AAAATTAATG ACACCATTTT GGCATCTGGC AACTTAAGGT TTGCCAGTGA AATTCAGATC CGTTCAGAGG TTACTGGCAT TGTTGATCAA GTTTACGTTA AGGAGGGGCA ACTTGTAGAA AAAGGTGACC TTCTTATGGA GTTAGATCCA GAAATCTTTA TTGCTGAGGT TCGAAAAGCT CGTGCTTCTG TTGAGATTCA GCTCATTGAG ATCCAACGAT TAGAGGAGCT AGCCAATGAG GCCGCTCGAC GTGCTGGGCA GTATCGAGAG TTATTGGGTA AAGGGTTAAC GGATCAAGAT ACTGCGGCAC AATTACAGAG CCAGTTGAAA GTTGCCAAGA TTAATGTGAG AGCGGCAAAA CAGGGATTGG AGCAATATAA AGCTATCTTA GCTCAAAGTC AGAGCCGCCT TGATAAGTCT CGTTTCCATG CCGCAATTGA TGGTTTGATC TCTACTGTTG ATATTAAAGA GGGAGAAACG GTTATTGCTG GGACAACCAA TATTATAGGT AGCCCGCTAA TGACTTTGGC TGATGTTGAC TCTTATGTCG CTCAGATCAG AGTGGATGAA GCTGATGTTG CTAACATTGA ACTTGGTCAG GAGGTCGAGG TATTTGCTGC TGCAACCCCA CAAATGGCTT CCTTGGGACG GATATCCTCA ATTAGTACAT CTGCCAGAAA AGATGGTGTG AATAAGGGCC TTTACTACAA GGTAGAGGTG ATGCTTCAAA AAGAGCAGTT CGCATACCCA GGTATGAGCT GTCGTGCCGA GATTGTTTTA GCCCGTTCAG ATGTTGAATT AATTATACCT ATCGCTGCGG TAAAACAGTT TGATGGTAAA AGTTATGTTT GGGTGGTTGA GGAGAATAAA GCTGTAAGAC GAAATATTCA GCTTGGTTTG TCTACTGACA CTGAGCAGAT AGTGCTATCA GGGCTGAGCA ATAAAGAAGT TGTCATTGTT GGGCCTAGTC GCCAAGTCAA AGCGTTAAAA GAGGGCGCAG AGGTACAGCA TAAGGAGAGT TACCATGCAT CACTCTAA
|
Protein sequence | MKKILSFAFI LLSVSLLILV SKEKSLSDGL VVDTHVVSED KINDTILASG NLRFASEIQI RSEVTGIVDQ VYVKEGQLVE KGDLLMELDP EIFIAEVRKA RASVEIQLIE IQRLEELANE AARRAGQYRE LLGKGLTDQD TAAQLQSQLK VAKINVRAAK QGLEQYKAIL AQSQSRLDKS RFHAAIDGLI STVDIKEGET VIAGTTNIIG SPLMTLADVD SYVAQIRVDE ADVANIELGQ EVEVFAAATP QMASLGRISS ISTSARKDGV NKGLYYKVEV MLQKEQFAYP GMSCRAEIVL ARSDVELIIP IAAVKQFDGK SYVWVVEENK AVRRNIQLGL STDTEQIVLS GLSNKEVVIV GPSRQVKALK EGAEVQHKES YHASL
|
| |