Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4837 |
Symbol | |
ID | 6119214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5824133 |
End bp | 5825665 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641636418 |
Product | histidine ammonia-lyase |
Protein accession | YP_001763181 |
Protein GI | 170729155 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCATT TAGTATTAAA GCCAGGTACC CTGACCCTGT CGCAGATCCG CGATATTAGC CGTAATAAGT TAACACTTGA GCTTGCCGAT GAAGCGATTG CCGATATCAA TATCAGCTCT GGCATAGTGC AGAAGATTAT CGATGAGGGC CGCACCGTTT ATGGTATCAA CACAGGCTTT GGTCTGTTAG CGAATACCAA GATTGAAGAT AAAGATCTGC AGCTACTGCA GCGCTCAATC GTACTTTCCC ATGCTGCTGG TACTGGGCAA TATATGCAAG ATGCAACAGT GCGCCTGATG ATGGTCTTGA AGATCAACTC ACTAAGCCGT GGTTTCTCTG GTATTCGTCT AGAGGTGATA AACTTCCTGA TTCAGTTGGT TAATGCAGAG GTTTACCCTT GCGTTCCAGA GAAGGGCTCT GTTGGCGCAT CGGGTGATTT AGCCCCATTA TCACACATGA GCCTAACGCT ACTTGGTGAA GGTGAAGTGA GCTATAAGGG CCAGATCATG TCTGCTAAAG AGGGGCTTGA GATAGCTGGT CTTGAGCCGA TTGAGCTGGC TGCAAAAGAG GGACTCGCCC TGCTTAACGG TACGCAAGCC TCTACTGCAT TAGCGCTTGA AGGCCTGTTT AATGCTGAAG ATCTGTTTGC GGCAAGCTCT GTTATTGGCG CGATGAGCGT CGAAGCTGCC ATGGGCAGTC GCAGCCCATT TGATCCACGT ATTCATGCAG CCCGTGGTCA GAAGGGTCAG ATGGATGCTG CTGGACTGTT CCGTCACCTC TTGGGTGATG AGTCTGAGAT CAGCCTAAGC CATGTAGACT GTGAGAAAGT GCAAGATCCA TATTCACTAC GTTGTCAGCC GCAGGTCTTA GGAGCGTGCC TAACGCAAAT TCGTCAGGCT GCAGAAGTGT TAGGTACTGA AGCCAACGGC GTAACTGATA ACCCACTCGT GTTCCAAGAT ACTGGTGACA TCATCTCAGG TGGTAACTTC CACGCCGAGC CCGTCGCGAT GGCGGCCGAT AATCTAGCGA TTGCTCTTGC TGAGCTCGGT GCGATTGCTG AGCGTCGTAT TGCGCTACTT ATCGACCCTA ACCTGTCTAA ACTGCCACCA TTCTTAGTTG AAAATGGCGG GGTAAACTCT GGCTTTATGA TTGCTCAGGT TACTGCTGCC GCATTGGCCT CTGAGAATAA GACTTACGCA CACCCAGCTT CAGTAGACAG CTTACCGACA TCAGCAAACC AAGAAGATCA TGTCTCTATG GCAACCTTCG CTGCTCGTCG TCTGCGTGAT ATGTCTGAAA ATACTCGCGG CGTACTTGCG ATTGAGTTGT TGGCTGCGGC GCAAGGGCTT GATTTCCGTG CTCCACTGCA ACCAAGTGCT GCCGTGGCTA AGGCGAAAGC TGAGTTACGT GAAGTAGTAA CCTACTATGA TAAGGACAGG TTCTTCGGCC CAGATATCGA AGCGTCGACA GACTTGCTAC TGACCTCTAG CTTCAATAGC TATCTGCCAG CAGGGATTCT TGCTAGTTTC TAA
|
Protein sequence | MSHLVLKPGT LTLSQIRDIS RNKLTLELAD EAIADINISS GIVQKIIDEG RTVYGINTGF GLLANTKIED KDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI NFLIQLVNAE VYPCVPEKGS VGASGDLAPL SHMSLTLLGE GEVSYKGQIM SAKEGLEIAG LEPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDPR IHAARGQKGQ MDAAGLFRHL LGDESEISLS HVDCEKVQDP YSLRCQPQVL GACLTQIRQA AEVLGTEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG AIAERRIALL IDPNLSKLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM ATFAARRLRD MSENTRGVLA IELLAAAQGL DFRAPLQPSA AVAKAKAELR EVVTYYDKDR FFGPDIEAST DLLLTSSFNS YLPAGILASF
|
| |