Gene Swoo_4837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4837 
Symbol 
ID6119214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5824133 
End bp5825665 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content50% 
IMG OID641636418 
Producthistidine ammonia-lyase 
Protein accessionYP_001763181 
Protein GI170729155 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCATT TAGTATTAAA GCCAGGTACC CTGACCCTGT CGCAGATCCG CGATATTAGC 
CGTAATAAGT TAACACTTGA GCTTGCCGAT GAAGCGATTG CCGATATCAA TATCAGCTCT
GGCATAGTGC AGAAGATTAT CGATGAGGGC CGCACCGTTT ATGGTATCAA CACAGGCTTT
GGTCTGTTAG CGAATACCAA GATTGAAGAT AAAGATCTGC AGCTACTGCA GCGCTCAATC
GTACTTTCCC ATGCTGCTGG TACTGGGCAA TATATGCAAG ATGCAACAGT GCGCCTGATG
ATGGTCTTGA AGATCAACTC ACTAAGCCGT GGTTTCTCTG GTATTCGTCT AGAGGTGATA
AACTTCCTGA TTCAGTTGGT TAATGCAGAG GTTTACCCTT GCGTTCCAGA GAAGGGCTCT
GTTGGCGCAT CGGGTGATTT AGCCCCATTA TCACACATGA GCCTAACGCT ACTTGGTGAA
GGTGAAGTGA GCTATAAGGG CCAGATCATG TCTGCTAAAG AGGGGCTTGA GATAGCTGGT
CTTGAGCCGA TTGAGCTGGC TGCAAAAGAG GGACTCGCCC TGCTTAACGG TACGCAAGCC
TCTACTGCAT TAGCGCTTGA AGGCCTGTTT AATGCTGAAG ATCTGTTTGC GGCAAGCTCT
GTTATTGGCG CGATGAGCGT CGAAGCTGCC ATGGGCAGTC GCAGCCCATT TGATCCACGT
ATTCATGCAG CCCGTGGTCA GAAGGGTCAG ATGGATGCTG CTGGACTGTT CCGTCACCTC
TTGGGTGATG AGTCTGAGAT CAGCCTAAGC CATGTAGACT GTGAGAAAGT GCAAGATCCA
TATTCACTAC GTTGTCAGCC GCAGGTCTTA GGAGCGTGCC TAACGCAAAT TCGTCAGGCT
GCAGAAGTGT TAGGTACTGA AGCCAACGGC GTAACTGATA ACCCACTCGT GTTCCAAGAT
ACTGGTGACA TCATCTCAGG TGGTAACTTC CACGCCGAGC CCGTCGCGAT GGCGGCCGAT
AATCTAGCGA TTGCTCTTGC TGAGCTCGGT GCGATTGCTG AGCGTCGTAT TGCGCTACTT
ATCGACCCTA ACCTGTCTAA ACTGCCACCA TTCTTAGTTG AAAATGGCGG GGTAAACTCT
GGCTTTATGA TTGCTCAGGT TACTGCTGCC GCATTGGCCT CTGAGAATAA GACTTACGCA
CACCCAGCTT CAGTAGACAG CTTACCGACA TCAGCAAACC AAGAAGATCA TGTCTCTATG
GCAACCTTCG CTGCTCGTCG TCTGCGTGAT ATGTCTGAAA ATACTCGCGG CGTACTTGCG
ATTGAGTTGT TGGCTGCGGC GCAAGGGCTT GATTTCCGTG CTCCACTGCA ACCAAGTGCT
GCCGTGGCTA AGGCGAAAGC TGAGTTACGT GAAGTAGTAA CCTACTATGA TAAGGACAGG
TTCTTCGGCC CAGATATCGA AGCGTCGACA GACTTGCTAC TGACCTCTAG CTTCAATAGC
TATCTGCCAG CAGGGATTCT TGCTAGTTTC TAA
 
Protein sequence
MSHLVLKPGT LTLSQIRDIS RNKLTLELAD EAIADINISS GIVQKIIDEG RTVYGINTGF 
GLLANTKIED KDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI
NFLIQLVNAE VYPCVPEKGS VGASGDLAPL SHMSLTLLGE GEVSYKGQIM SAKEGLEIAG
LEPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDPR
IHAARGQKGQ MDAAGLFRHL LGDESEISLS HVDCEKVQDP YSLRCQPQVL GACLTQIRQA
AEVLGTEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG AIAERRIALL
IDPNLSKLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM
ATFAARRLRD MSENTRGVLA IELLAAAQGL DFRAPLQPSA AVAKAKAELR EVVTYYDKDR
FFGPDIEAST DLLLTSSFNS YLPAGILASF