| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4833 |
|---|
| Symbol | |
|---|
| ID | 6119210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5820437 |
|---|
| End bp | 5821063 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641636414 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_001763177 |
|---|
| Protein GI | 170729151 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTTTG ATACTTGGCT ACTCTACTTT TTTGCTGTCC TGCTGATCGC CGTTTCTCCG
GGAACCATGG CGGTATTATC GATGAGCCAT GGTATCCATT TCGGTAAGAC TCGCAGTTTG
GCAACCGCAT TGGGTAGTGT CACTTCAGCA CTTATTTTGA TGGCGGCATC GGCAGCGGGG
CTCGGCGCTC TACTGAGTGC AACAGAGTAT GGATTTACGA TTTTAAAATA CTGCGGCGCA
GCCTATTTGC TGTTTCTTGG TATCAAACTA CTGCTAACAA AAGCCAGCTC TCAAGGGCTA
GATCTACAAC AGATCAAGAG TAAAGGCACA CCAGCGCAGA TGTTTAAACA GGCCTTTCTA
GTGGGAATTA GTAACCCGAA AGACCTGCTT TTTTTTGGCG CACTCTTCCC ACAGTTTATC
GATATCTCAG CCCCTCAAGC ACCACAACTG GCCATTCTTG CAATCACCTG GGCTGTTATA
GATTTCAGCT TTGTGATGAT CTACGCCAGC ATGGCTAATG TGTTAGCCCC AACCCTGAAA
ACCAGCAATA AACTGCACTG GTTCGATCGA ACCAGTGGCG GTGTGTTTAT CAGCTTAGCG
GCAATCTTAG TCACTCGAGA AAACTAA
|
|---|
| Protein sequence | MLFDTWLLYF FAVLLIAVSP GTMAVLSMSH GIHFGKTRSL ATALGSVTSA LILMAASAAG
LGALLSATEY GFTILKYCGA AYLLFLGIKL LLTKASSQGL DLQQIKSKGT PAQMFKQAFL
VGISNPKDLL FFGALFPQFI DISAPQAPQL AILAITWAVI DFSFVMIYAS MANVLAPTLK
TSNKLHWFDR TSGGVFISLA AILVTREN
|
|---|
| |