| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4811 |
|---|
| Symbol | |
|---|
| ID | 6119188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5797117 |
|---|
| End bp | 5798130 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641636392 |
|---|
| Product | formate dehydrogenase, gamma subunit |
|---|
| Protein accession | YP_001763155 |
|---|
| Protein GI | 170729129 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.241214 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA CATCACTACG CAGCCTGTTT GCTTCGCTTG TTTTACCGCT CGTTATCTTA
ATGGGTTTAG GTTTGAGTAC ATCAGCCTTA GCCGCAGATG GACAAAACAG CCAACAAATT
GCGAATGCAA AAACCAGTGA TGCGGATCTT TGGCGTGCTG TTAAGGCCGG TGATTCCGGT
TATACCGTTG CCCAAGGGAG TGAGGCCGGC GTACTAATTA ATGTTGTCGG TAATGAAGGC
AAAAACATTA AGAATGAATA CCTGACACCT GCCATGGGAG TGGCGGTACT TGGGGTATTT
GCTGCCTTCT TAATCTTCTA TTTTGTTAAC GGCCCTTCAA AGCTAACCAA AGGCTTCTCC
GGTAAAATGG TGTTGCGTTG GTCGAAGGCC GATCTGATTA TCCACTGGGT ATTAGCCATC
TCATGTTTGG GGTTAATATT CACGGGTATC AATATCATGC TGGGCAAACA TATTCTTCAA
CCTTATGTGG GTGAAGGAGT GTGGGCCGCA CTGATATACG GCAGTAAGAC TATCCATGAT
TATGTGGGTC CGCTGTTTAT CGTGTCATGG ATCTTATGTG TGGTTAAGTG GATGCCGCTG
CAGACGCTTA AGATGTATGA CCTGAAATGG TTCCTTGTGG TTGGTGGTTA CATCAACTTT
GGACCATTTA AAGGGAAGCA CCCTGACAGT GGTTTTGCCA ATGCGGGTGA GAAGATGTGG
TTCTGGACCT TAGCTATCTT CGGTCTGTTT ATCAGTGTTT CCGGTATTAT GCTGGTATTG
CCTGGCCTAG AGCTTCCTCG CGAAGCCTCG ATGGCTGCTC TGCTTATCCA TGGCTTAAGT
GCCATTATTA TCATCGCGTT TACTATCGTG CATATCTGGA TGGCGACGGT ATTGAGTGAG
GGTGGTATGG AGTGTATGAA GTCCGGTTAT TGTGATGAAA ACTGGGCTGT ACAGCACCAT
AATCTTTGGT ATGACGAGAT CAAAGAGAAC GGCACATTGG AGTATAAAGA CTAG
|
|---|
| Protein sequence | MKLTSLRSLF ASLVLPLVIL MGLGLSTSAL AADGQNSQQI ANAKTSDADL WRAVKAGDSG
YTVAQGSEAG VLINVVGNEG KNIKNEYLTP AMGVAVLGVF AAFLIFYFVN GPSKLTKGFS
GKMVLRWSKA DLIIHWVLAI SCLGLIFTGI NIMLGKHILQ PYVGEGVWAA LIYGSKTIHD
YVGPLFIVSW ILCVVKWMPL QTLKMYDLKW FLVVGGYINF GPFKGKHPDS GFANAGEKMW
FWTLAIFGLF ISVSGIMLVL PGLELPREAS MAALLIHGLS AIIIIAFTIV HIWMATVLSE
GGMECMKSGY CDENWAVQHH NLWYDEIKEN GTLEYKD
|
|---|
| |