| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4765 |
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| Symbol | |
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| ID | 6119142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5750704 |
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| End bp | 5753928 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641636346 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001763109 |
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| Protein GI | 170729083 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000523741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCATCAG TGATAAACCG GATAAGTTTT AAAAATAAAC TGCTCCTGTT TGCAGCAATA
CCTATGTTGC TTCTCTCTCT ATTTGTTTCT ATAACCATGT CCGGACTATT GGACAGCTTC
CAGACAGCTC AAAAAAACAC ACTAACGATA GAGGTCACTC TCGAAATAGA GAACCTACTC
TTTGAGTTAC AAAAAGAGCG TGGACTTACA GCAGGCTTTA TTGGTAGCCA AGGTGAAAAA
TATCAACGGC GCCTCCTCGA ACAACAGCAA CAAACAGATC TGCAGCTTAA TCAGCTTCTG
ACTAACAGTG CCTTAGGAGA GATGCTCAGC CAAAATACAG AACGTTCACG GGTATTGTTC
GAGAACTTCC AACGAATCCA AGCGATTGCC CTTCAATTAC CCGATATACG ACAAAACGTC
CCTCAACTAG GAGGGTCACC TTTTCAATAT TTCTCAGAGT TTAATTACCG TCTGCTGATC
TTTATCTCTC AATTACAGGT ACATACCCAA GATCCCCTGC AGTCTAGCGC CTATAATGAT
CTACTTAATG TGTTGAACAT ACAGGAGTTA GCAGGGCAGG AACGAGGATT AGTCAATCAG
TTACTCTCAG CCAAGCTGAT GACATCTAAC ACCATTATCA CCATCCACGC CATTGAAAAT
GAGCTAGATG ACTCAATAAA CCAGCTGCTG TCCACCGCAG ACGCTGAACA TAAGCAGTCC
ATTCGAAAGA TACTGTCCAA CGACACTCAT ACTCAATACT TGGTGATGAG ACAAAAAATA
AAGTCACAGA TCCACTTGGT AGGATTAGCA CAGGAGCTAA ACCTTCTACT GGGTTACGGT
GGCTTAATCC ATAACTTTAA AAACTATCTA CTCAGGGGCG ACCTTAATTA TTTCGAGCAG
TTTCAAAGTG ACGTTCAGCA ACTTAAAAAT AAGCTATCCA CTATAGAGCA ACAACACCTT
TTAACTCCTT TACAAAGAGC ATCCATAACT CAGATCAGAG AGACAATTGA GGAGTATCAA
GAAAACATTT TCCTTTTGAA ACAGCTCAAA CTGCAGGGGA TCACAATACA GGAGCAGGAC
AAATTGGTTC GAGTCGATGA TGGGCCGATG CTAGCTTCAC TCTCCAAACT TCAACTACAA
ACCCCTAAGG TCGATAGTGA AAACTGGTGG CAAGTAACCA GCAAGCGCAT CGATGATCTA
CACCAACTCA GCTCCACTAT CTCAAACAGA ATCGAGAAGT TAAGTGCGCA ACAGAAAAAT
GACTCACTGC TTTTCCTCGC CGTAGGAATA ACTGTCACCC TCATCAATAT TTTACTTCTG
TTTATTCTAG GTCGCACTAT GGTGAGGAAC TTAGTTGGTA GTGTCTCAGC CATAGCTAGA
GATATGCAGA AAATGGCCCA AGACCCCCAT CTGGATCTGA CGGTTACCGT AGAGGGAGAT
GATGAGATAG CCCAGATGTC CCAATCACTC AACTTGATGT TAAAGGAGCG ACTAAAAGCC
AATAATCAGC TGAACTTAGC TGCTGCCGTA TTTAACTATT CAGCCGAAGG GATAATGGTC
ACAGATAAAG ATAACTGTAT CGAATTGGTT AACCCCGCCT TCACCCAGAT AACGGGATAC
ACATTAGAGG AGGTCAAAGG TAAGAAACCT TCGATGCTTA AATCGGATAT GCAGCCCACT
GGTTACTACC AATCCATGTG GTCATCTCTG GAGCAGAGTG ATAAATGGGA AGGAGAGGTG
TGGAATAAAC GCAAGAATGG ACAGGTATAT CCCGAATACC TTGCTATCAC GGTCGTGCGC
GATGAAGCAG GCAATATTGT CCAACATATA GGTTTATTTC TTGATATCAG TAATCGTAAG
AAGTATGAGC AAGATATCTG GTATAAAACC AATTACGACG CACTAACAAA CCTCCCCAAT
CACCACCTCT ACACTACAAG GTTGCAGCAG GAGATACTTC AGAGTAAACA GAGATCATCA
CAGCTAGCCA TCTTATTTAT CGACCTAGAT AGGTTCAAAT ATATTAATGA TATTTATGGC
CATAACTTAG GGAATGAGTT GCTTCGTCTG GTTGCTGCAA GATTAGAATA CCTGCTAGAT
AAGCATGATT TTGTTGCCCG CTACAGCGGT GATGAGTTTG TGATCATTAA AACTCAGGTC
GAAACTGAGG AGCAGTTAAA GAAGTTCACT AAATCAGTGC TTAAACATAT CTCTTCACCT
TTTGATCTTA GCCATAACGA GTTGATGATC TCAGCGAGTA TCGGTATCTG CCTCTATCCT
GATAACGGTG ACGACCCAGA GCTTTTAACT CGAAATGCCG AAACAGCCAT GTATAAAGCC
AAAGGGGATG GCCGTAGTAA CTATCGGTAT TTCTCCCCTG AGATGAATGC CAATATGTTG
GAGCGGATTG AGCTGGAGCA ACGCCTCAGA CGAGCTGTGC TACAAAAAGA GTTTTGCCTT
AATTACCAAC CCATAGTTAC CCTTAACGAT CGCAGTATTA TCGGCGTTGA GGCCTTAATT
CGTTGGCAAG ATCCTAAGTT TGGATTGATC CCGCCGGATC AATTTATCCC ACTTGCCGAA
GAAACAGGCC TAATAGAGCC AATAGGAGAG TGGGTGCTCG AGCAGGCACT CATCGATCTT
CACAGTTGGC ATAGTCAGGG TTATATGATC AATATGGCGG TCAATGTCTC AGGCAGGCAA
CTTATCAATG GTAATCAGAT CTCCTTTAAT CGTCTGATAT CTAAGTTACT GAAAAAATAC
GGTATAGATG CAAAATACCT GCATATAGAG ATCACCGAAT CTATGTTAAT GGAGGACAGA
GAGCAGTGCC TACATGCATT AGAGGCGATT CGTGATCACG GCATGGATAT CTATATCGAT
GACTTTGGTA CTGGCTACTC CTCCCTCAGT TACCTGAAAA GCTTTCCTAT CTCTGTGATA
AAAATAGATA AGAGCTTTGT CGACAATATG CTGGAGTGCC CATCTGATGC CAATCTGATT
AAAGCCATTA TTATGATGGG GAAAAGTTTA GAGCTTAAAC TTGTGGCTGA AGGAATAGAA
ACCGAGAAAC AGCTGGCATT TTTACGCAGT TTAGGTTGTG ACTTTGGTCA GGGATATCTC
ATCTCACGCC CATTGCCAAA TCACGAGCTA AGCAATTTAC TGACACTGAG GCTAACGCCA
ACATTAAAGC ATGAACAAAA TCTAGAAGAG TATCTAAACA TCTAA
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| Protein sequence | MASVINRISF KNKLLLFAAI PMLLLSLFVS ITMSGLLDSF QTAQKNTLTI EVTLEIENLL
FELQKERGLT AGFIGSQGEK YQRRLLEQQQ QTDLQLNQLL TNSALGEMLS QNTERSRVLF
ENFQRIQAIA LQLPDIRQNV PQLGGSPFQY FSEFNYRLLI FISQLQVHTQ DPLQSSAYND
LLNVLNIQEL AGQERGLVNQ LLSAKLMTSN TIITIHAIEN ELDDSINQLL STADAEHKQS
IRKILSNDTH TQYLVMRQKI KSQIHLVGLA QELNLLLGYG GLIHNFKNYL LRGDLNYFEQ
FQSDVQQLKN KLSTIEQQHL LTPLQRASIT QIRETIEEYQ ENIFLLKQLK LQGITIQEQD
KLVRVDDGPM LASLSKLQLQ TPKVDSENWW QVTSKRIDDL HQLSSTISNR IEKLSAQQKN
DSLLFLAVGI TVTLINILLL FILGRTMVRN LVGSVSAIAR DMQKMAQDPH LDLTVTVEGD
DEIAQMSQSL NLMLKERLKA NNQLNLAAAV FNYSAEGIMV TDKDNCIELV NPAFTQITGY
TLEEVKGKKP SMLKSDMQPT GYYQSMWSSL EQSDKWEGEV WNKRKNGQVY PEYLAITVVR
DEAGNIVQHI GLFLDISNRK KYEQDIWYKT NYDALTNLPN HHLYTTRLQQ EILQSKQRSS
QLAILFIDLD RFKYINDIYG HNLGNELLRL VAARLEYLLD KHDFVARYSG DEFVIIKTQV
ETEEQLKKFT KSVLKHISSP FDLSHNELMI SASIGICLYP DNGDDPELLT RNAETAMYKA
KGDGRSNYRY FSPEMNANML ERIELEQRLR RAVLQKEFCL NYQPIVTLND RSIIGVEALI
RWQDPKFGLI PPDQFIPLAE ETGLIEPIGE WVLEQALIDL HSWHSQGYMI NMAVNVSGRQ
LINGNQISFN RLISKLLKKY GIDAKYLHIE ITESMLMEDR EQCLHALEAI RDHGMDIYID
DFGTGYSSLS YLKSFPISVI KIDKSFVDNM LECPSDANLI KAIIMMGKSL ELKLVAEGIE
TEKQLAFLRS LGCDFGQGYL ISRPLPNHEL SNLLTLRLTP TLKHEQNLEE YLNI
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