| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4764 |
|---|
| Symbol | ribB |
|---|
| ID | 6119141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5749586 |
|---|
| End bp | 5750239 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641636345 |
|---|
| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| Protein accession | YP_001763108 |
|---|
| Protein GI | 170729082 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000151604 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGT CATTACTTAC CCCTTTCGGC ACAGCCATTG AACGTGTTGA AGCAGCGCTT
ACCTCCCTTA GACAGGGACA AGGTGTTCTC GTTGTCGATG ATGAAGATAG AGAAAATGAA
GGCGATCTTA TCTATTCGGC ACAATCTCTA ACTAACGAAC AGATGGCACT GCTAATACGA
GAGTGTAGCG GTATCGTTTG CCTCTGTTTA ACCGATGAAC GTATCAAACA GTTAGATCTC
CCCCCTATGG TCGAAGATAA CTCCAGTCAA TACGGCACAG CGTTTACCGT GAGCATAGAA
GCAAAAGTGG GCGTAACCAC AGGTGTTTCG GCAGCGGACC GCGTGACCAC AATTAAAGCA
GCTATCGCAG ACAACGCAGT ACCAGAAGAT CTGGCTCGCC CAGGCCATGT CTACCCACTT
CGTGCTCAAT CTGGGGGTGT ATTCTCCCGC CGAGGACATA CGGAAGGCAC CATAGATCTC
ATGTTACTGG CCGGTTTAAA ACCTGCAGGT GTACTGTGCG AAATCACTAA CCCAGATGGC
ACCATGGCTA GACTGCCCGA AATCATCCAA TTTGGTCAGC AGCATAATCT ACCAGTGCTA
ACCATAGAGG ACATTGTTGA ATATCGTAAA GTAACCATGG AGAAGGCGAG TTAA
|
|---|
| Protein sequence | MNQSLLTPFG TAIERVEAAL TSLRQGQGVL VVDDEDRENE GDLIYSAQSL TNEQMALLIR
ECSGIVCLCL TDERIKQLDL PPMVEDNSSQ YGTAFTVSIE AKVGVTTGVS AADRVTTIKA
AIADNAVPED LARPGHVYPL RAQSGGVFSR RGHTEGTIDL MLLAGLKPAG VLCEITNPDG
TMARLPEIIQ FGQQHNLPVL TIEDIVEYRK VTMEKAS
|
|---|
| |