| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4743 |
|---|
| Symbol | |
|---|
| ID | 6119120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5725465 |
|---|
| End bp | 5726349 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641636325 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_001763088 |
|---|
| Protein GI | 170729062 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.274982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTACA CCTTTGGGCA CTGCCATCTA AATACTAAAA CACATCAGTT ATATGTAAAC
GATGGACTCA TTTCACTCGA AAACAGACAG TTTTTACTTC TGCAACTTCT AGCTAAATCT
GGTAATCAGG TGGTGTCCCG TGATCACCTG CTTGAAAATT TATGGCCAAA GCAGATAGTC
AGTGATACCT CCCTATCTAG GCTTATCTCA GACACCCGAA AATTGATTGG TGATGATGGC
AAGTCACAAC ATATCATCAA GACCTGTCGT GGTGGTGGCT TTATGCTAGT CCCTCCCATC
ACCATGAGCG ATACAGAGCA GCCAACTCTA ACATCTAGAA GAGGTATCGC TGTTTCAGTC
TCGCTCCTAG GCTTATTGCT GTTAGCACTC ACCTACTTAG GCTATAACGC GATTCCTCAA
AAGTCAGACA ACTACCAGCT TATTATCACC ATACAACAGC AGTTAGATAT CACTAAAACC
GCTTTTATCG CCCAAACAAA AAGGCGTAAT GAGCTCGGAA AAACGCTAGG AATTGAAGCT
GGAGGAGATA TTTTATGGGA GCAAGTGTTT AGCGCCGCAT ATCCAGATCT GACCAAACGA
CAAAAGTTTA TCTTCGATCA GATCCGCGGG ATCACCCAAG GAGCCATGTA CAACGGCAAT
CAAGCTATCG CAGATATTTT ACAGCAAAAC CCAGATCTGA AAAATCAGAT TGCGAGCCTT
GGTCCACTAC TAAGTCACCT AAACTACTGG CTAGCAAAAT ACCAACAAGT ATTTCTGCAA
AGGGAGGATA TGTGCCTCCT CTATGTTGGT AGAGAAGATG GCGTTCCCTT CCCCAGTAGA
GTCGATAAAG ATGTCGCCGA TTGGTTAGCG GCAAATAAAT CTTAG
|
|---|
| Protein sequence | MIYTFGHCHL NTKTHQLYVN DGLISLENRQ FLLLQLLAKS GNQVVSRDHL LENLWPKQIV
SDTSLSRLIS DTRKLIGDDG KSQHIIKTCR GGGFMLVPPI TMSDTEQPTL TSRRGIAVSV
SLLGLLLLAL TYLGYNAIPQ KSDNYQLIIT IQQQLDITKT AFIAQTKRRN ELGKTLGIEA
GGDILWEQVF SAAYPDLTKR QKFIFDQIRG ITQGAMYNGN QAIADILQQN PDLKNQIASL
GPLLSHLNYW LAKYQQVFLQ REDMCLLYVG REDGVPFPSR VDKDVADWLA ANKS
|
|---|
| |