| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4734 |
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| Symbol | |
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| ID | 6119111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5711952 |
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| End bp | 5714096 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636316 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001763079 |
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| Protein GI | 170729053 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000953864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGA AGAATATTCG CAGGAAGTTA ATCGCAAGTT TAGTGATGGG GGCATCTTTA
CTTGCTCCTC AACTTGCTTG GTCTGAGCAG TATGCGGCTA ATTTCAAAGG GACTGATATT
CAAGAGTTTA TCAACATTGT TGGTAAGAAC CTTAATAGGA CTATCATTGT CGATCCTACT
GTGCGCGGTA AAATCAATGT CCGCAGTTAC GATCTGCTCA ACGATGAGCA ATATTATCAA
TTCTTCCTCA ATGTACTTCA GGTTTATGGT TATGCCGTCG TCGAGATGGA TAACAACATC
ATCAAGGTCA TCAAAGATAA AGATGCAAAA ACAGCCGCTA TTCGTGTGGC CGATGATAAA
ACTCCCGGCT TAGGCGATGA GATGGTGACG CGAATTGTTG CCCTCTACAA CACAGAAGCT
AAGCAGCTTG CTCCGCTACT TCGTCAGCTT AATGATAATG CCGGTGGCGG TAACGTGGTT
AACTATGACC CATCCAATGT CTTGATGATC TCTGGCCGTG CTGCCGTAGT GAATAAGTTG
GTTGAGATTG TTCGCCGCGT CGATAAGCAA GGTGATACTG AAGTTCAGGT TGTGCCACTC
GAATACGCCT CTGCAGGCGA GATAGTGCGC ATTATCGATA CCTTATATCG CTCTACCGGA
AATAAATCTC AGATGCCTGG CCAGGCACCA AAAGTGGTGG CTGATGAGCG TATGAATGCC
GTCATCGTTA GCGGTGACGA GAAGAGCCGC CTACGTGTGG TTTCGTTAGT GAAAAAACTC
GATGCCGAGC AAGCCAGCAC AGGTAATACT AAGGTACGTT ATCTCAGATA CGCTAAAGCC
GAAGATCTGG TTGAGGTGTT AACAGGTTTT GCTGAGAAGC TAGTCAACGA CAAAGATGGC
GGCGGTGGAC AAGCCGGTGG TAAGAAGCGC CGTAATGAGA TCAACATTAT GGCCCATGAT
GACACCAACG CTTTGGTGAT CAGTGCTGAG CCAGATCAGA TGCGTACCAT TGAAAGTGTT
ATTAACCAGT TAGATATTCG CCGTGCACAG GTTTTGGTTG AAGCGATTAT CGTTGAGGTC
TCAGAGGGCG ATGATGTCGG TTTCGGTGTT CAGTGGGCAA CCGCAGCAGG TGGTGGTACT
CAGTTTAATA ATTTAGGCCC GACTATCGGC GAGATTGGTG CTGGTGTTTG GAATGCTAGA
GATCAAAAAG CCTCTCAAAC CTGTAGTGGT TCAGGCGACA ATCAAACCTG TACCGATAAT
CCAGATACTC CCGGTGATAT TACCTTGCTA GCTCAAGCGT TAGGCAAGGT TAATGGTATG
GCGTGGGGCG TGGCCATGGG TGACTTCGGT GCACTGATCC AAGCTGTTTC TAGCGATACC
AAATCAAATG TTTTAGCGAC ACCTTCAATC ACGACACTAG ATAACCAAGA AGCGTCATTT
ATTGTTGGTG ATGAAGTGCC TATTTTAACG GGCGCGCAAA ACTCAAGTAA CGGCAACAGT
AACCCATTCC AAACCGTTGA GCGTAAAGAG GTGGGAGTTA AGCTCAAGGT TGTGCCGCAA
ATTAACGAAG GTAGCTCGGT TAAGCTGACC ATTGAGCAAG AGGTGTCAGG CATTAACGGT
AAAACAGGTG TCGATGTGAC CTTTGCTACG CGCCGTTTGA CCACTACTGT GATGGCTGAT
TCGGGGCAGA TCGTTGTGCT AGGTGGCTTG ATTAATGAAG AGGTGCAGGA GAGTGTGCAG
AAGGTACCTT TCCTTGGTGA TATCCCGATC ATTGGTCACC TGTTTAAGTC CTCATCAAGC
GGTAAGAAAA AGAAAAATCT GATGGTGTTT ATTAAGCCAA CGATTATTCG TGATGGCATC
ACCATGGAAG GCATCGCAGG TCGTAAATAT AACTATTTCA GAGCACTACA GATGGAGCAG
CAGGAGCGTG GTATTAACCT AATGCCAAAC AGCGAAGTAC CTGTTCTTGA AGAGTGGAAT
CAAGCAGATT ACCTACCTCC TGAAGTGAAC GATATTCTTG AGCGTTACAA AGAGGGCAAA
GGTTTAGAGA CTAAGATGCG TCAAACAGAC TCTACCCTGA AATCTATCTC AGATAATAAA
GAGACTGATA CCGATACTGC CAGCGAAGAT AGTCATGATG AGTGA
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| Protein sequence | MNKKNIRRKL IASLVMGASL LAPQLAWSEQ YAANFKGTDI QEFINIVGKN LNRTIIVDPT
VRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAVVEMDNNI IKVIKDKDAK TAAIRVADDK
TPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLMI SGRAAVVNKL
VEIVRRVDKQ GDTEVQVVPL EYASAGEIVR IIDTLYRSTG NKSQMPGQAP KVVADERMNA
VIVSGDEKSR LRVVSLVKKL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AEKLVNDKDG
GGGQAGGKKR RNEINIMAHD DTNALVISAE PDQMRTIESV INQLDIRRAQ VLVEAIIVEV
SEGDDVGFGV QWATAAGGGT QFNNLGPTIG EIGAGVWNAR DQKASQTCSG SGDNQTCTDN
PDTPGDITLL AQALGKVNGM AWGVAMGDFG ALIQAVSSDT KSNVLATPSI TTLDNQEASF
IVGDEVPILT GAQNSSNGNS NPFQTVERKE VGVKLKVVPQ INEGSSVKLT IEQEVSGING
KTGVDVTFAT RRLTTTVMAD SGQIVVLGGL INEEVQESVQ KVPFLGDIPI IGHLFKSSSS
GKKKKNLMVF IKPTIIRDGI TMEGIAGRKY NYFRALQMEQ QERGINLMPN SEVPVLEEWN
QADYLPPEVN DILERYKEGK GLETKMRQTD STLKSISDNK ETDTDTASED SHDE
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