Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4732 |
Symbol | |
ID | 6119109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5709087 |
End bp | 5710310 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641636314 |
Product | general secretion pathway protein F |
Protein accession | YP_001763077 |
Protein GI | 170729051 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0181431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCGT TTGAATATAA GGCATTAGAT AATAAGGGAA AGCAGCAGAA AGGTGTGATG GAAGCTGATA CGGCGCGTCA TGCCCGTGGT CAGTTAAGAG AACTGCGCCT GATGCCGCTG GAGATTGTGC CAGTTGTAGA GAAGGAGACC AAGGCGAAAA CCGGTGGTAA AAGCCTGTTT CAACGTGGGA TCTCTGTCGC TGAACTCGCC CTTATTACCC GTCAGATTGC TACCTTAGTG GCGGCTGGTT TACCTGTTGA AGAGGCGCTA AAAGCCGTTG GTCAGCAGTG TGAGAAAGAT AGGCTCGCCA GCATGATCAT GGCGGTTCGC TCCCGTGTCG TTGAGGGTTA TAACTTAGCC GACTCTATGG CCGAGTTCCC CCATATCTTT GACGATCTCT ACCGCGCTAT GGTGGCTTCC GGTGAAAAAT CTGGCCACCT AGAAGTTGTA CTTAATCGAC TTGCCGATTA CACCGAGCGT CGCCAACAGT TAAAGAGCAA GATGACTCAG GCGATGATCT ACCCAGTGGT TCTTACCGTT GTCGCTATCA GTGTTATCGC TATCTTGCTT GCGGCGGTAG TGCCTCAAGT TGTTGGTCAA TTTGAGCATA TGGGCCAGGA GCTCCCCTGG ACAACCTTGC TGCTTATCGC CTCTTCAGAC TTTATCAGAG ACTACGGCAT TATCATTTTA GGCGCTGCTT TTGCGCTGTT TGTACTCTTT AAGCGTATGC TCACTAAGCC TGAATTTAGG ATGAAATACG ATTCTCTACT ACTGACACTT CCTGTTATAG GCAGGGTGAG TAAGGGATTA AACACGGCGC GTTTTGCTCG TACTTTAAGT ATCTTAACTG CCAGCTCTGT GCCTCTGCTC GATGCGATGC GTATCGCCAG TGAGGTCTTA GTCAATGTGA AAGTTCGAGC GGCAGTAGAG GAAGCAACAG CGCGAGTTCG TGAAGGAACC AGCTTAGGCG CTGCACTGAC GAATACGAAA CTTTTTCCGC CTATGATGCT CTATATGATC ACCTCGGGTG AAAAGAGTGG ACAGCTAGAG CAGATGCTTG AGCGCGCTGC CGATAACCAA GATAGAGAGT TTGAGTCCAA TGTGAATATC GCTTTGGGTG TTTTTGAGCC TCTATTAGTG GTGAGTATGG CCGCTGTGGT ACTGTTTATC GTGCTGGCAA TTCTGCAGCC AATCTTAGAG TTGAATAACA TGATTAGTGG CTAG
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Protein sequence | MPAFEYKALD NKGKQQKGVM EADTARHARG QLRELRLMPL EIVPVVEKET KAKTGGKSLF QRGISVAELA LITRQIATLV AAGLPVEEAL KAVGQQCEKD RLASMIMAVR SRVVEGYNLA DSMAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKMTQ AMIYPVVLTV VAISVIAILL AAVVPQVVGQ FEHMGQELPW TTLLLIASSD FIRDYGIIIL GAAFALFVLF KRMLTKPEFR MKYDSLLLTL PVIGRVSKGL NTARFARTLS ILTASSVPLL DAMRIASEVL VNVKVRAAVE EATARVREGT SLGAALTNTK LFPPMMLYMI TSGEKSGQLE QMLERAADNQ DREFESNVNI ALGVFEPLLV VSMAAVVLFI VLAILQPILE LNNMISG
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