| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4730 |
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| Symbol | |
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| ID | 6119107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5707952 |
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| End bp | 5708533 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636312 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_001763075 |
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| Protein GI | 170729049 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.129836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGAACTC TTCATCAAAA AGGCTTCACC TTAATGGAAG TGTTATTGGT CATTCTCTTA
ATGGGACTGG CCGCTTCTGC TGTGACCATG AGTATGAGTG GCGCCGATAA AAAACGTGAG
CTGGAGAAAA CGGCTCAGCA GTTTATGGCA GCGACTGAGA TGGTACTGGA TGAGACGGTA
CTCAGTGGAC ACTTTATTGG CATAGTGATC GAAGATGATA GCTATAAGTA TGTCGTCTAT
GACGAAGCCA AGTGGAAACC GCTGACTCAA GACAGGATCT TAGGTGAGCG GGAGATGGAG
CCCGGGGTAA GGATCGATCT GGTACTCGAT GGTTTACCTT TGGTGCAAGA TGATGAAGAG
CAAGATAGCT GGTTTGAGGA GCCTTTGATT GAAAAATCCG AGGAAGATAA GAAGAAGTTT
CCTGAGCCAC AGATCTTGCT GTTTCCAAGT GGAGAAATGA GTGCTTTTGA GCTGATGTTT
GTCAGTGAAG ATGAAACTGG CAAAGAGGTT GAGGCGTTAG TGGTTGGTGA TGCATTGGGA
CGTATGACTC AGGGGAGAGA CCATGGTTTC GATGAGCACT AA
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| Protein sequence | MRTLHQKGFT LMEVLLVILL MGLAASAVTM SMSGADKKRE LEKTAQQFMA ATEMVLDETV
LSGHFIGIVI EDDSYKYVVY DEAKWKPLTQ DRILGEREME PGVRIDLVLD GLPLVQDDEE
QDSWFEEPLI EKSEEDKKKF PEPQILLFPS GEMSAFELMF VSEDETGKEV EALVVGDALG
RMTQGRDHGF DEH
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