| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4728 |
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| Symbol | |
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| ID | 6119105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5706780 |
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| End bp | 5707574 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641636310 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_001763073 |
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| Protein GI | 170729047 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGCTCAA CCAAGATAAA TAAAACTGCA GGTTTTACCC TGCTTGAGAT GATCATCGCC
ATCGCCATCT TCTCTATGTT GGGCCTTGCT TCTAATGCCG TGCTGCAAAA TGTGATGCGC
AATGATGAAG TAACCAAGGA CTTCTCTAAT AGGCTTAAGG CGATGCAGCA AGGATTTGGC
GCTTTAGAGC GAGATTTTGG TCAGATGGTG GCACGCTCTC CTCGTTTACT TGAGGGTGGC
CGCGGAACAA CGGTTTTTCA AACGGGTTCA GATATTTTAG ATTCTGAATC AGAAGCCCTA
GTGTTTTTTC GGATAGGTTG GCTCAATCCC GATGGGATCT TACCAAGAGG AAGCATTCAG
TCGGTTGTCT ATGTGGTTAG TGAAAATAAT CTTGAGCGTT GGTACTACCC CTATCCAGAA
CCTGAGTTTG GTAGCGATCC GATAAAAACC ATAGTGATGC GCGATGTGAT CTCGGTGGAA
TACTCCTTCT TTGTCGAAGA CAAATGGGAG CGAAAGGTCG ATGCAGCCAA TCTACCTAAG
GCTATCGCCA TGGAGATTGA ACTTGAGGGA GTAGGCAAGA TCCAGCGTAA GTTTTTACTG
CCAGTTGGCG CCAAAGCGGG TTCTGGCGAT GACAATGGTA GTAATGGCGG CAATAACAAC
GGCGATAATA AAGACGGCAG TAATAACACC GGCGGTGGCA GTAGTAGCGG TGGTAGCAGC
GGCGGCGGTA GTAATAACGG CGGTGGAACT AACAACGGTG AAGATGAGAA TGGCCGTGAA
AAGGGTGGTG GTTAA
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| Protein sequence | MCSTKINKTA GFTLLEMIIA IAIFSMLGLA SNAVLQNVMR NDEVTKDFSN RLKAMQQGFG
ALERDFGQMV ARSPRLLEGG RGTTVFQTGS DILDSESEAL VFFRIGWLNP DGILPRGSIQ
SVVYVVSENN LERWYYPYPE PEFGSDPIKT IVMRDVISVE YSFFVEDKWE RKVDAANLPK
AIAMEIELEG VGKIQRKFLL PVGAKAGSGD DNGSNGGNNN GDNKDGSNNT GGGSSSGGSS
GGGSNNGGGT NNGEDENGRE KGGG
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