| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4711 |
|---|
| Symbol | |
|---|
| ID | 6119088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5688724 |
|---|
| End bp | 5689338 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641636293 |
|---|
| Product | DNA-binding transcriptional repressor FabR |
|---|
| Protein accession | YP_001763056 |
|---|
| Protein GI | 170729030 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000633687 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0908035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGCA TTAGAGCACA GCAGAAAGAG AAAACACGCC GAGCATTAGT CGATGCAGCG
TTTAATCAAC TGAATGCTGA GCGGAGTTTC TCAAGTCTGA GCTTGCGTGA GGTTGCACGC
GAAGCCAAAA TTGCGCCGAC CTCTTTCTAT CGTCACTTTA AGGACATGAA TGAGCTGGGC
CTTACTATGG TCGACGAAGG TGGTTTGACC CTACGTCAGA TGATGCGTAA AGGGCGTCAA
CGCGCTGAAG CCGGTGGGAG TGTTATTCGG ATCTCTGTTG ATACTTTTAT GGAAGTGCTT
GAGTCTAATC CAAACGTCTT CAGGATTTTG CTACACGAAC GTTCTGGTAC TTCGGCTCCA
TTTCGTGCGG CGGTTGCCCG TGAAATTGAG CATTTTATCT CAGAGCTAGC TCACTATACC
GAAGCGACGG CAAAACGAAG TCCTGAACTT GCCCGTGCAC AGGCTGAAGC TTTAGTTACA
CTTGTATTTA ATGCCGGAGC GGCAGCACTG GATATGAAGC GAGTGGATCG TAAGATATTA
GCTGACAGAT TGGTGATACA GCTTCGTATG GTCGCTAAGG GATCTGAAGC GCTACAGCAT
AAGATGGATA AGTAA
|
|---|
| Protein sequence | MMGIRAQQKE KTRRALVDAA FNQLNAERSF SSLSLREVAR EAKIAPTSFY RHFKDMNELG
LTMVDEGGLT LRQMMRKGRQ RAEAGGSVIR ISVDTFMEVL ESNPNVFRIL LHERSGTSAP
FRAAVAREIE HFISELAHYT EATAKRSPEL ARAQAEALVT LVFNAGAAAL DMKRVDRKIL
ADRLVIQLRM VAKGSEALQH KMDK
|
|---|
| |