Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4706 |
Symbol | |
ID | 6119078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5676502 |
End bp | 5677464 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641636283 |
Product | biotin--protein ligase |
Protein accession | YP_001763051 |
Protein GI | 170729025 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region [TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.144079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00201782 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGATC AATGGCAGCG TAAACGTGAG ATTTTGTCTG TACTCGATTC TGAGCAGTTT GTTTCTGGTG AAGCTTTAGC TGCAAAGCTT GGGGTGTCTC GAACTGCCAT CGCTAACCAC ATTAGTGCGT TAGAGGAGTA TGGTGTCGAG GTGTTTAGCG TCAAAGGAAA GGGATATAAA TTAGCTAACT CACTCTCTTT GATAGATGAA ACTCTATTAA AAGAGGCTGT TACACAACGT TGTTTTTATT ACGATGAGAT CCCCAGTACG AACGCTTTTT TGCTTAAGCA TTGTGAGGAG CTATCTTCCG GTGATATCTG TGTTGCTGAG TATCAATCGG CAGGACGAGG TCGCCGTGGA AGAACTTGGG TTTCTCCCTA TGGATGCCAT CTATATTGCT CTATGTACTG GAACTTATCC CAAGGGATGG CTCAAGCTAC TGGATTAAGT CTGGTGGTTG CCTGCTCTTT GGTTAAAGTG CTCAATAATT TCGGGATCCA TGGCCTAGGT GTGAAGTGGC CAAATGATAT CTATCTTGAT AATAAAAAAT TAGCCGGTGT GTTAGTTGAG ATGAATGGTC AGGCCGATAC TGAGTGTCAT CTGGTTATTG GGATCGGGAT TAATATGTCT ATGTCTCGTG CCCAAGGAGA TAAGATTGAT CAACCATGGA GTGATCTTTC TCAAAGCAGA GTCGTGCCGA GTAAAACCGA GTTAACAATC TCATTGCAGC GCCAGCTCAA TGAAGATCTT ACTTTATTTG AAAAAGAGGG GTTATCGGCA TTTTTAATTC GCTGGAAAGA GGCTGACATC TTTGATGGTA AGCATGTAAA ACTCTTAATG GGTGAGCAGC GTATTGATGG AGTTTGCAAA GGTATCGACA AAACAGGGTC CATCTTATTG AAAACTGATA AGGGAGTAGA GTCTTTTGTT GGTGGTGAGA TAAGCTTAAG AAGTGCCGAA TAG
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Protein sequence | MIDQWQRKRE ILSVLDSEQF VSGEALAAKL GVSRTAIANH ISALEEYGVE VFSVKGKGYK LANSLSLIDE TLLKEAVTQR CFYYDEIPST NAFLLKHCEE LSSGDICVAE YQSAGRGRRG RTWVSPYGCH LYCSMYWNLS QGMAQATGLS LVVACSLVKV LNNFGIHGLG VKWPNDIYLD NKKLAGVLVE MNGQADTECH LVIGIGINMS MSRAQGDKID QPWSDLSQSR VVPSKTELTI SLQRQLNEDL TLFEKEGLSA FLIRWKEADI FDGKHVKLLM GEQRIDGVCK GIDKTGSILL KTDKGVESFV GGEISLRSAE
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