| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4700 |
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| Symbol | rplA |
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| ID | 6119069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5671201 |
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| End bp | 5671902 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636274 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001763045 |
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| Protein GI | 170729019 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000139189 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000553638 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAAGC TAACTAAACG CGCTCGTTTG ATCCGCGAAA AAGTAGAAGT AACTAAAAAC
TACGATATCA ATGAAGCTGT TGCACTTCTA AAAGAACTAG CTACTGCTAA GTTCGTAGAA
AGTGTTGACG TTGCTGTTAA CCTTGGTGTT GACCCACGTA AATCTGACCA AAACGTTCGT
GGTGCTACTG TACTACCACA CGGTACTGGT CGTGAAGTTC GTGTTGCTGT ATTCACCCAA
GGTGCTAACG CTGAAGCGGC AACTGCTGCT GGCGCTGAGC TAGTTGGTAT GGACGAGCTT
GCTGCACAAG TTAAAGCTGG TGAGATGAAC TTCGACGTAG TTATTGCATC TCCAGATGCA
ATGCGTGTTG TTGGTCAACT TGGTCAGATC TTAGGCCCAC GTGGTCTAAT GCCTAACCCT
AAGACTGGCA CTGTAACGCC TAACGTTGCT GAAGCTGTTA AGAACGCTAA AGCTGGTCAG
GTTCGTTACC GTACAGACAA GAACGGTATT ATCCACACTA CTATCGGTAA AGTGGATTTT
GAAACTGTTC AACTTAAAGA AAACCTAGAA GCCCTAATCG GTGCTCTTGT GAAGGCTAAG
CCAGCTTCAG CTAAAGGTGT TTTCCTTAAG AAAGTAAGCA TCTCTACCAC TATGGGTGCA
GGTGTTGCGG TTGACCAGGC TACTCTGGCT AAAGCGCTAT AA
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| Protein sequence | MAKLTKRARL IREKVEVTKN YDINEAVALL KELATAKFVE SVDVAVNLGV DPRKSDQNVR
GATVLPHGTG REVRVAVFTQ GANAEAATAA GAELVGMDEL AAQVKAGEMN FDVVIASPDA
MRVVGQLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRTDKNGI IHTTIGKVDF
ETVQLKENLE ALIGALVKAK PASAKGVFLK KVSISTTMGA GVAVDQATLA KAL
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