Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4666 |
Symbol | rpsD |
ID | 6119035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5644333 |
End bp | 5644953 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641636240 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_001763011 |
Protein GI | 170728985 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000332608 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000000965042 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGCAAGAT ACTTGGGTCC AAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC CTAAAAAGCG GCGTGAGAGC AATCGATTCG AAGTGTAAGC TTGAAACTGC ACCTGGACAA CACGGCGCTC GTAAGACCCG TCTGTCTGAG TATGGTGTTC AGCTACGCGA GAAGCAAAAA GTTCGTCGTA CTTACGGTGT GCTAGAAAAG CAATTCCGTA ACTACTACAA AGACGCTGCA CGTACTAAAG GTAACACTGG TGAGAACCTA CTTACTCTTT TAGAAACCCG TCTTGATAAC GTTGTATACC GTATGGGCTT CGGTGCTACA CGTGCAGAAG CACGTCAGCT AGTAAGCCAT AAGTCTATTA TGGTAAACGG CAGCGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT GATGTAATTA GCATTCGTGA GAAGTCTAAG AAGCAAGCAC GTATTATTGC TGCTTTGGAA GTTTCTTCTC AACGCGAAAA GCCAACATGG GTTGAAGTTG ATAACACTAA GATGGAAGGT GCTTTCAAGC GTCTACCAGA GCGTAGTGAT TTATCTGCGG AAATTAACGA ACAGCTCATC GTCGAACTTT ACTCTAAGTA A
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Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKTRLSE YGVQLREKQK VRRTYGVLEK QFRNYYKDAA RTKGNTGENL LTLLETRLDN VVYRMGFGAT RAEARQLVSH KSIMVNGSVV NIPSFKVSAN DVISIREKSK KQARIIAALE VSSQREKPTW VEVDNTKMEG AFKRLPERSD LSAEINEQLI VELYSK
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