| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4665 |
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| Symbol | |
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| ID | 6119034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5643319 |
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| End bp | 5644308 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636239 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001763010 |
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| Protein GI | 170728984 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000963877 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000124552 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAGA CCGCGTCTCG TTGATATCGA GCAGGTTAAT
CCAACACGTG CCAAAGTTAC ACTTGAGCCG CTAGAACGTG GTTTCGGTCA CACTTTAGGT
AACGCGTTGC GTCGTATCCT ATTGTCGTCA ATGCCAGGCT GCGCGGTAAC CGAAGTAGAG
ATCGATGGTG TACTGCATGA ATACAGTAGC AAGGAAGGCG TTCAAGAGGA TGTTCTTGAG
ATCCTACTAA ACCTTAAAGG TTTAGCAGTA GTGGTCGAAG GAAAAGACGA AGCTATGCTT
ACGTTAAGTA AGTCAGGCGC AGGCCCTGTT ACTGCAGCAG ATATCACGCA TGATGGTGAT
GTTACCATCA TGAATCCTGA CCATGTTATC TGTCATTTGA CAGGTAATAA TGATGTCAGC
ATGCGTATCC GTGTAGAGCG TGGTCGTGGT TATGTACCGG CATCAGCCCG TGCACAAACT
GAAGACGACG AACGCCCTAT CGGCCGCTTG TTGGTGGATT CTTCATTCTC GCCAGTAGCA
CGTATAGCCT ACAATGTAGA AGCTGCACGT GTTGAACAGC GTACTGACTT AGATAAACTC
GTTATTGATA TGACCACAAA CGGTACTATC GATCCTGAGG AAGCTATCCG TCGCAGTGCA
ACCATTTTAG CTGAACAGCT AGATGCGTTT GTTGAGCTTC GTGATGTTAC TGAGCCAGAG
TTGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTTTGCTAC GTCCTGTCGA CGATTTAGAG
CTAACTGTAC GTTCAGCTAA CTGTTTGAAG GCTGAAGCGA TTCATTATAT CGGTGATCTG
GTACAACGTA CTGAAGTTGA GTTGCTTAAG ACTCCTAACC TAGGTAAGAA GTCTCTTACT
GAAATTAAGG ATGTTTTAGC GTCTCGCGGA CTGTCGTTAG GTATGCGTCT TGAAAACTGG
CCTCCAGCTA GTTTAGCAGA CGACCTTTAA
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| Protein sequence | MQGSVTEFLR PRLVDIEQVN PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDVLE ILLNLKGLAV VVEGKDEAML TLSKSGAGPV TAADITHDGD
VTIMNPDHVI CHLTGNNDVS MRIRVERGRG YVPASARAQT EDDERPIGRL LVDSSFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
LKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL
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