Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4651 |
Symbol | |
ID | 6119017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5625322 |
End bp | 5626731 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641636222 |
Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
Protein accession | YP_001762996 |
Protein GI | 170728970 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.446316 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATGAAC AGGTATGGGT ACTCGATGAT GATAGCTCTA TTCGCTGGGT TGTTGAGCGG GCATTAAAAG GGGCAGAGAT AAGCAGTACC AGCTTCGCTG CTGCTGAGTC ACTTTGGGAT GCACTAGATC ATGGTCAGCC TAAAGTCATT ATTTCAGACA TTAGAATGCC AGGCACAGAT GGGTTAACAC TACTTGAGCG AATTCAGGTT CACTACCCTC ACATACCGGT CATCATAATG ACTGCGCATT CTGATCTCGA TAGTGCGGTC AATGCTTACC AAGCAGGCGC ATTTGAATAC CTGCCCAAAC CATTCGACAT TGACGAAGCG ATTGCACTTG TGGAGAGGGC CTTAACCCAC TCCAATGAAC AGATTGTAAA GCAAAACGAT GAGCTAACGG TAAAAGCGCC AGAGATCATA GGCGAAGCAC CTGCTATGCA GGAAGTGTTC AGAGCTATTG GCCGCCTTTC ACGCTCCTCC ATCAGCGTAC TAATTAATGG ACAATCTGGA ACAGGTAAGG AGCTTGTTGC TGGCGCCCTT CACAAACACA GCCCACGCAA AGAGAAGCCT TTTATTGCAA TTAACATGGC AGCGATCCCT AAAGATCTTA TTGAATCTGA GCTTTTCGGC CACGAAAAAG GCGCATTTAC AGGGGCAGCA GCAGTAAGAC AAGGGCGATT CGAACAAGCT AATGGAGGCA CGCTTTTCCT CGATGAAATT GGTGATATGC CCCTCGATGT TCAAACCCGT TTACTGCGCG TATTAGCTGA CGGGCAGTTT TATCGCGTTG GCGGTCATTC GCCAGTTCAA GTGGATGTAA GGATCATAGC TGCAACCCAC CAAGACTTGG AGCTTCTGGT TCAAAAGGGA GAGTTCAGAG AAGATCTCTA TCATAGGTTA AACGTCATAC GCGTCCACTT ACCGGCGCTC TCACAACGCA GGGAAGATAT TCCACAGTTA GCACGTCACT TCCTAAGCTC CGCGGCTAAA GAGATTGCCG TAGAACCAAA ATCACTCACC AAGGAGACGG CAGAGAAGCT CTCTCAGCTC CCTTGGCCAG GGAATGTAAG ACAGCTAGAA AACACCTGTC GGTGGTTAAT GGTGATGGCC TCAGGGCAGG AGATTTTACC TCAAGATCTC CCCCCTGAGC TTTTACAAGA ACCGAGTCAA ACCAACTCAT TATCCACAGG TGAGCCTGCA GACTGGCAGG AATCATTGAA GCTTTGGATC GATGAGCGAC TCACTGCTGG AGAGAATGAC CTCCTCACTG AAGTGCAGCC GGCTTTTGAA CGTATTCTGC TACAAACTGC TTTAGCCCAC ACCAATGGTC ATAAGCAGGA AGCCGCCAAA CGTTTAGGTT GGGGGCGAAA CACGCTCACC CGAAAACTCA AAGAGTTATC TATGGATTAA
|
Protein sequence | MNEQVWVLDD DSSIRWVVER ALKGAEISST SFAAAESLWD ALDHGQPKVI ISDIRMPGTD GLTLLERIQV HYPHIPVIIM TAHSDLDSAV NAYQAGAFEY LPKPFDIDEA IALVERALTH SNEQIVKQND ELTVKAPEII GEAPAMQEVF RAIGRLSRSS ISVLINGQSG TGKELVAGAL HKHSPRKEKP FIAINMAAIP KDLIESELFG HEKGAFTGAA AVRQGRFEQA NGGTLFLDEI GDMPLDVQTR LLRVLADGQF YRVGGHSPVQ VDVRIIAATH QDLELLVQKG EFREDLYHRL NVIRVHLPAL SQRREDIPQL ARHFLSSAAK EIAVEPKSLT KETAEKLSQL PWPGNVRQLE NTCRWLMVMA SGQEILPQDL PPELLQEPSQ TNSLSTGEPA DWQESLKLWI DERLTAGEND LLTEVQPAFE RILLQTALAH TNGHKQEAAK RLGWGRNTLT RKLKELSMD
|
| |