Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4645 |
Symbol | |
ID | 6119011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5616153 |
End bp | 5618999 |
Gene Length | 2847 bp |
Protein Length | 948 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641636216 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001762990 |
Protein GI | 170728964 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAGCC CGTCTCCCGA TACAGAGAAT CAACCTCATA CCATAAGGAG CATCGCATTA AAGCTTAACC TAAGCACTCT GTTTATAGGT ACATTACTCT GTGGCATTCT GGCTATATAT TTTTTTCAAG AGACGCAAGA GAGAGTAAAA GAGCAGGCTA GCATTGAGCT TACTCAAATC ACCGACACAT TAAAGCTCGC ACTAGAAACC AACTCCCAGC TCTCCAATAT GATCCGTATT GTGGGGGTCT TAACAACCAA TAAAAATATT GATCGCCTTT CGGTGATTAA GTCATCTGAT ATGAGAGTTA ATGCCGATAG TTTAACTCAA TATAATGGAA GGTTAGCTAA AGAGGTCTTT CCCGCTCCTA TTATGGAGCT GTTAACTAAT CCAGCAAGAG TTCATGATCA ACAATCTGGT GAGTTTATTG GCAACCATTT ACACCATGCA GTTCAATTTC ACTTAATCGA TCCTGAAGTA AACCGCCTCA GGCCTTACAT CATCTACTTC AAATATGACA AAACCCTATT AGAAGCAGGA ATCAATCAAA CTCGTAATAA CTACCTGCTT ATTGTCATAT GTGCATTTAG TTCACTTCTG CTTATTAACC TATGGATACA TAAAGTGGTG GTACTCACCC CACTATCTCA GATCACAGCT CAACTTAAGC ACCAAGCTGG ACGCAATATC AGCCCAAAGC CCCTAAAAAT CTCTACAAGG GATGAGTTCA GTATACTTGC CAATAGCTAT AACCACTCTG TTCATACTCA GCTACTGCAA AAAAAGGAGC TGGAAAAATC TCACCGCCAT ATAAAGAATA TGACTAGAGT GCTTCCTGTA CATTTGATCT ATGTCGATAC CAAACAAAAA ATTCAATTTA TTAACCGTCA CAGCCTTAAC TGGTTGGATT GTGAAAGCAA TGAGGTGTTG AACCGCACCT GTGAGGCGAT CATCCCCCCT AAACTTTTTA AACTTATGGC TCCCTTCATT GAACAAACCC TTAAAGGAGA GACATTAACC TTTGATGCTG AGTTCCAACA CCTCAATAGT GAGGAGCTCA ACTTCCATAT CACTCAAGTA CCAGACATTG ATGCGGATGG GAAGATAAAT GGTTTTTTTG TCTGCATAGA AGATCAGACT CAAACAAGGA ACAATGAGAA GAAAATTGAA AAGTATGCTC AGGATCTTGA GTTTAATAAC TGGGCTCTGG ATGAAGCCCG TGAAGAGGCT GAGGCCACAG GAAGAGCGAA ATCTGAATTT CTTGCTTGTA TGAGCCATGA GATCCGAACA CCAATGAATG GCGTGCTAGG CATGCTTAGC CTGCTAAGCA GAACTGAGTT AGATCAAGAT CAGCAACACC ACCTAGAGAT AGCCCAAGGT AGTGCTAAGT CTTTGCTTAC TCTAATCAAT GACATTCTGG ACTTCTCTAA GATTGAATCA GGAAAACTCA ATCTTGAGTC TATCGAGTTT AATCTGCATC AAACTTTAGA TGAGCTAATA CAGCCATTAG CCATTCGAGC GCAAGAGAAG AGCCTTGAAT TAACACTAGA CATAAGCCAG ATCAAACCCG CGAATATTAC TGGAGATCCA GGGAGAATCA CCCAAGTCTT AACCAACCTA ATAGGGAATG CCATAAAGTT TACCCCTAAA GGCAGCATTA TCGTAACCGG AAAGCTGACC GCTAAAAATA ATAATCATCG CCTGACTTTT TCAATCCAAG ATACAGGCAT TGGGATGAAG CAAGATAAGC TCGAAAACAT ATTTCAAGCC TTTAGCCAAG CAGACAATTC AACCACTCGA CACTACGGTG GAACAGGGCT AGGACTCTCT ATCGCAAAAC ACCTCAGCCA CCTGATGAAT GGAGATATCT CAGTTACCAG CAAAGAGAAT ATAGGCAGTC ACTTCGTAGT AGACCTTGAG ATCCAACTAC CAGACTCCAA CTCAATGAAA CAAGATAACT CCATACTCGA CCTCAATAAG CTCCCCGTAT TGTTACTAAG CAAAGCCTCG TTTGCCGATA ATATACTTGA GAAGATTTTC AGAGAATTTA ATGCAGATAT TGAGAGACTA GTCGTAAAGG GAAATGACAA AACTATTGAT TTGAGTAAAT TAACCAACCC TCATCCCCAA TTGATTATTT TGAGCCTATC AGCAGGAGAA CAAGCTATCA GAGCTGAGCT AGAGAAGCTA AACAGTGAAC CATTACTATC AAACATTACA ACCTTGCTAA GTTACAACTC AATAGATGCA CCGATTATTC ATCACTATTT ACAGAAGCAG ATCTGTGGAG CCTTCACTAA ACCAATCTCA CAAATCAGAC TTGCCTCCCT GCTCACCAAA TACAATCAAG CACACACCTC CTCTTCTCAT GAAGTTACAG TGGACTCTGG CGATGACTGG CTTCTAACAA ATCACTTCAC TCCCACTCAG CCTAGGCTGC TTTTGGCCGA AGATAATATG GTCAATCAGC TTGTTGCCGA GGGGATCATC AAGGAGTTTG GTCTAGAAAT TGAGATAGTT AACGACGGTA TTCAAGCTTT GAAAGCTTTA TCTGACTCTA GTCAAGATAA CCCCTACCAT CTGATTTTCA TGGACTGTCA GATGCCTAAA CTAGACGGTT ACCAAACCAC AGCCAAAATT CGTGATGGTG AAGCGGGGGA GCATTACAAA AACCTCCCCA TCATAGCAAT GACAGCAAAC GCTATGGTTG GTGACAAGGA AAAATGCCTA GCGATCGGCA TGAATGACTA TATCTCCAAG CCACTCGAGC CAGAACATAT CAAGACAGCT TTACTTACTT ACCTCGCTCA TCTCACAAAT AAAAATGAAC AACGCCATTC AGGCTAA
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Protein sequence | MESPSPDTEN QPHTIRSIAL KLNLSTLFIG TLLCGILAIY FFQETQERVK EQASIELTQI TDTLKLALET NSQLSNMIRI VGVLTTNKNI DRLSVIKSSD MRVNADSLTQ YNGRLAKEVF PAPIMELLTN PARVHDQQSG EFIGNHLHHA VQFHLIDPEV NRLRPYIIYF KYDKTLLEAG INQTRNNYLL IVICAFSSLL LINLWIHKVV VLTPLSQITA QLKHQAGRNI SPKPLKISTR DEFSILANSY NHSVHTQLLQ KKELEKSHRH IKNMTRVLPV HLIYVDTKQK IQFINRHSLN WLDCESNEVL NRTCEAIIPP KLFKLMAPFI EQTLKGETLT FDAEFQHLNS EELNFHITQV PDIDADGKIN GFFVCIEDQT QTRNNEKKIE KYAQDLEFNN WALDEAREEA EATGRAKSEF LACMSHEIRT PMNGVLGMLS LLSRTELDQD QQHHLEIAQG SAKSLLTLIN DILDFSKIES GKLNLESIEF NLHQTLDELI QPLAIRAQEK SLELTLDISQ IKPANITGDP GRITQVLTNL IGNAIKFTPK GSIIVTGKLT AKNNNHRLTF SIQDTGIGMK QDKLENIFQA FSQADNSTTR HYGGTGLGLS IAKHLSHLMN GDISVTSKEN IGSHFVVDLE IQLPDSNSMK QDNSILDLNK LPVLLLSKAS FADNILEKIF REFNADIERL VVKGNDKTID LSKLTNPHPQ LIILSLSAGE QAIRAELEKL NSEPLLSNIT TLLSYNSIDA PIIHHYLQKQ ICGAFTKPIS QIRLASLLTK YNQAHTSSSH EVTVDSGDDW LLTNHFTPTQ PRLLLAEDNM VNQLVAEGII KEFGLEIEIV NDGIQALKAL SDSSQDNPYH LIFMDCQMPK LDGYQTTAKI RDGEAGEHYK NLPIIAMTAN AMVGDKEKCL AIGMNDYISK PLEPEHIKTA LLTYLAHLTN KNEQRHSG
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