Gene Swoo_4561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4561 
SymbolradC 
ID6118927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5530742 
End bp5531419 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content44% 
IMG OID641636132 
ProductDNA repair protein RadC 
Protein accessionYP_001762906 
Protein GI170728880 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000169917 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000617306 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGAATTA AAGACTGGCC AGATGGTGAA GGCCCTAGGG ATAGATTGAT CAAGTTTGGC 
GTATCACAAC TGTCTGATGC TGAAGTTTTA GCTGTACTCC TCAGAAATGG CTCACAGGGA
TTAAATGCTG TTGAGCTGGC AAGAAACCTA ATCAATGAGT TTGGTGGCCT TAGAGAGGTG
CTAGCGGCCT CGCAATCTCA AGTTTGTCGT TTATCTGGAA TGGGACCTGT CAAATTTGCT
CAACTGCGCG CGGCAGTAGA GTTAAGTAGT CGAGTTTCTG CGCAAAATTT AAAAAGAGGA
AAAATATTGA GTGATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT GCGTGATCGT
GCCTATGAAG TTTTTGCAAT TTTATTACTG GATAGCCAGC ACAGGGTGAT TCAGTTTGTT
GAACTATTTC GTGGCACCAT AGACTCAGCT TCGGTATATC CTCGTGATGT AGTTAGCTTA
GTACTAGAAA AAAAGGCCGC GGCTGTGATT GTCTGCCACA ACCATCCATC AGGAGTTGCG
GAGCCAAGTC ACGCCGATAG GCGAATTACT GAGCGATTGA AATGTGCGCT CTCAACCATA
GATGTTTCCT TGTTAGACCA TATGGTTGTA GGCGATCGCG AGATAGTTTC ATTTGCAGAG
CGGGGATGGA TAGATTAA
 
Protein sequence
MGIKDWPDGE GPRDRLIKFG VSQLSDAEVL AVLLRNGSQG LNAVELARNL INEFGGLREV 
LAASQSQVCR LSGMGPVKFA QLRAAVELSS RVSAQNLKRG KILSDPDLTR DYLMRQLRDR
AYEVFAILLL DSQHRVIQFV ELFRGTIDSA SVYPRDVVSL VLEKKAAAVI VCHNHPSGVA
EPSHADRRIT ERLKCALSTI DVSLLDHMVV GDREIVSFAE RGWID