Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4561 |
Symbol | radC |
ID | 6118927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5530742 |
End bp | 5531419 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641636132 |
Product | DNA repair protein RadC |
Protein accession | YP_001762906 |
Protein GI | 170728880 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2003] DNA repair proteins |
TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000169917 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000617306 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGAATTA AAGACTGGCC AGATGGTGAA GGCCCTAGGG ATAGATTGAT CAAGTTTGGC GTATCACAAC TGTCTGATGC TGAAGTTTTA GCTGTACTCC TCAGAAATGG CTCACAGGGA TTAAATGCTG TTGAGCTGGC AAGAAACCTA ATCAATGAGT TTGGTGGCCT TAGAGAGGTG CTAGCGGCCT CGCAATCTCA AGTTTGTCGT TTATCTGGAA TGGGACCTGT CAAATTTGCT CAACTGCGCG CGGCAGTAGA GTTAAGTAGT CGAGTTTCTG CGCAAAATTT AAAAAGAGGA AAAATATTGA GTGATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT GCGTGATCGT GCCTATGAAG TTTTTGCAAT TTTATTACTG GATAGCCAGC ACAGGGTGAT TCAGTTTGTT GAACTATTTC GTGGCACCAT AGACTCAGCT TCGGTATATC CTCGTGATGT AGTTAGCTTA GTACTAGAAA AAAAGGCCGC GGCTGTGATT GTCTGCCACA ACCATCCATC AGGAGTTGCG GAGCCAAGTC ACGCCGATAG GCGAATTACT GAGCGATTGA AATGTGCGCT CTCAACCATA GATGTTTCCT TGTTAGACCA TATGGTTGTA GGCGATCGCG AGATAGTTTC ATTTGCAGAG CGGGGATGGA TAGATTAA
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Protein sequence | MGIKDWPDGE GPRDRLIKFG VSQLSDAEVL AVLLRNGSQG LNAVELARNL INEFGGLREV LAASQSQVCR LSGMGPVKFA QLRAAVELSS RVSAQNLKRG KILSDPDLTR DYLMRQLRDR AYEVFAILLL DSQHRVIQFV ELFRGTIDSA SVYPRDVVSL VLEKKAAAVI VCHNHPSGVA EPSHADRRIT ERLKCALSTI DVSLLDHMVV GDREIVSFAE RGWID
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