| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4555 |
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| Symbol | |
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| ID | 6118921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5523599 |
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| End bp | 5526010 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636126 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001762900 |
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| Protein GI | 170728874 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00333953 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGAGTAA CTATGCGATT AACATTGTTA TCGAAATTGA TTGTTGGTGC CTTGATTGGA
GCCCCCTTGG TGTCATATGC AAATGATGAG ACAAGCGCAA GTGATGTGGG TGAAAGGCAG
CTTGAGGTGA TCACTGTCAC GGCACAAAAG CGTACTCAGA GTGTCAAAGA GGTGCCTCTC
TCAGTGGCTA CGGTCAGTAG AGAGGCGATA GAGGATATGA ATATCAGCAA CACTGAGGAG
TTATCGAGCC GTATTGGTAA CTTCAGTGTG AGCCAATCAG GTCAGGGGTT TAATATCTAC
ATGCGTGGTC TGGGCTCTGG GCCAAACCAA GGGTTTGAGC AGACGGTAGG AACCTATGTT
GATGGGATCT ACCGTGGCAG AGGGCACTTG ATGCGTAGCA CCTTTCTCGA CCTTGAGATG
GTGGAGGTAC TCAGGGGGCC TCAAGGAACC CTGTTTGGTA TGAACACCAC TGCAGGGGCG
CTTAATCTGA CCACTGCGGC ACCGACCGAT TACTTCAGCG GTTACCTTAA TGGTAACTAT
GACATGACGG ATCAAGGGTT AACGTTTGAG GGAGCGATTT CTGGTCCTTT GGCCGACAAT
TTTCAGGCGC GTTTTGCATT TAGAGCAGTA GACAGTGACG GCTATATGAC CAATAGCGTG
ACAGAGCAAA ATGAAGTGCA ACATGAAACA TTGTTGGGAC GATTATCTTT AGCTTGGCAA
CCAACAGATA GGTTAAGTAT CGATCTCAAG TTACAAGAAG ACAAAGATGA GTTTGTTGGT
GACAGTAATA CTAAAGGCAT ATTAGAGCCT GCTTTGGCTG CTGCGAACCC TGCGCTTGCT
GCGAGTTTAG GTGATTATGG TGTTAGTCTG GCATCAGCAA AAACAACACC TAGTTTAGGT
GAGGTTGAAG GGGGGGAGTT TACGGCAAGT CATCAAACCT TAAAGATAGA GTATGAACTT
GATGAGCACA CGTTAACGGC TATCAGCGGT TGGCAATCCT ATCAGGTAGA TACCTCAAAT
GATGGTGATA GAACCCCACG TCCCTTACTT TTTCGTAGTG TCAGTGATGA AGAGTATGAC
CAATTTAGCC AAGAGCTTCG TTTAGCATCA CAGGGAGGGG AGACGTTTGA TTATATTCTT
GGAGCCTATT ATCAAGACTC TGAGCTTAAC TATGATGAAC ATTTTCTAGC TTATGCACTG
CAGTTTGATG GTGTGCGACA GTTCGGGACT GACTCTGAGG TGATGAGTGT GTTTGGTAAG
TTTGACTGGC AGTTAGATGA TAACTGGAGT GCAAGCTTGG GGCTTAGGTA TACCCATGAG
GAGAAAGAGG GGTCTCGGGA TCTAACCTTG GTGGATCTGG TATCTGGTGA GCCTATCTCC
CAAGTGCCCT TAATTACCCC CCCTGCGCTT AAACCCGCGT TGGATCAATT TGGGCTTCCC
GCTATTCCAG GCTCAGTTTA CAGCTTGATG TTAGGCGCTG ATTATCCCTA TTTAGATCCT
CTTTTACTTG GTAGCAATAC ACAGAATATC GCCAACCCTA TTTATCGAAC TGGAGCGGAT
CATAGTATCC GAGCAGAGCG AACTGAGGAG AGTTTCACGC CTGCTCTTTC AGTAAGGTAT
CAACTGGAGG ATGCGATGTT TTACGCCAGT GTTGCTAAGG GAGCTAAGTC TGGTGGCTTT
GATGCCAGAG CGAATCTTCC CGAGAACTTC GAGTTTGATG ATGAATCTGT TTTGTCCTAT
GAGATCGGCA GTAAGCTTAC TTTAGATAGT GGCGCTGCAG ATCTTAATTT AGCATTGTTT
TATATGGAGT TTAGCGACCT GCAAACCTCA ACATTTGATG GCAATACAGG CTTTTTTGTG
GAAAACGGCG CTAAAGCAAC CTCATATGGT TTAGAGTTAG ATGGTCGCTG GGCATTTGCT
GATGACTGGA TGTGGTCTGG TAGTTTAGGT TTGCTTGATT TTAGCTGGGA TGAGTTTAGT
GGAGCAAAAT GCTTTACCAG TTTAAGTCAG ACCTCAACCA ATATTGAAGC TAATGGCAGC
TCTTGTGATC TTTCCGGTCA ACCCAATGCA CTGTCACCTA AGGTATCAGG CAGTACTTGG
CTTGAGTATC GCAGTGAGCT TAGCAGTGAT TATGATATTA GAGTGATGGC TGAGACAGTG
TTTAAATCCA GTTACTTTAC CAATGCCGAT CTCAACCCAT TCACAGAGCA GGAGGCGTTT
GTTAAATACA ATGCACAAAT CGCCTTGATC AATACTAATT CTGATTGGCA GCTAGGTTTA
ATATTAAAAA ATCTGTCTGA TGAGATCACG ATCAACAGCT CCTATGATAT GCCTTTTACC
CCTGGTGGCT ACGTGGTTTA CACCGAACCT GGGCGAACGG CGACTCTGCA GTTTAGCTAT
AAGTTTGATT AA
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| Protein sequence | MRVTMRLTLL SKLIVGALIG APLVSYANDE TSASDVGERQ LEVITVTAQK RTQSVKEVPL
SVATVSREAI EDMNISNTEE LSSRIGNFSV SQSGQGFNIY MRGLGSGPNQ GFEQTVGTYV
DGIYRGRGHL MRSTFLDLEM VEVLRGPQGT LFGMNTTAGA LNLTTAAPTD YFSGYLNGNY
DMTDQGLTFE GAISGPLADN FQARFAFRAV DSDGYMTNSV TEQNEVQHET LLGRLSLAWQ
PTDRLSIDLK LQEDKDEFVG DSNTKGILEP ALAAANPALA ASLGDYGVSL ASAKTTPSLG
EVEGGEFTAS HQTLKIEYEL DEHTLTAISG WQSYQVDTSN DGDRTPRPLL FRSVSDEEYD
QFSQELRLAS QGGETFDYIL GAYYQDSELN YDEHFLAYAL QFDGVRQFGT DSEVMSVFGK
FDWQLDDNWS ASLGLRYTHE EKEGSRDLTL VDLVSGEPIS QVPLITPPAL KPALDQFGLP
AIPGSVYSLM LGADYPYLDP LLLGSNTQNI ANPIYRTGAD HSIRAERTEE SFTPALSVRY
QLEDAMFYAS VAKGAKSGGF DARANLPENF EFDDESVLSY EIGSKLTLDS GAADLNLALF
YMEFSDLQTS TFDGNTGFFV ENGAKATSYG LELDGRWAFA DDWMWSGSLG LLDFSWDEFS
GAKCFTSLSQ TSTNIEANGS SCDLSGQPNA LSPKVSGSTW LEYRSELSSD YDIRVMAETV
FKSSYFTNAD LNPFTEQEAF VKYNAQIALI NTNSDWQLGL ILKNLSDEIT INSSYDMPFT
PGGYVVYTEP GRTATLQFSY KFD
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