| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4537 |
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| Symbol | |
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| ID | 6118903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5501530 |
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| End bp | 5502897 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636108 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001762882 |
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| Protein GI | 170728856 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0142161 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCGCT TAACCTTATC TCTGTTAAGT CAGCGACTCA ATGGTCGTTT GATCGGCAGT
GATACAGAGA TACTAAATGT GTGCAGTGAC AGCCGGAGTA TTCCGGAGAA GACACTGTTT
GTCGCCTTAA AAGGTGAGAA GTTTGATGGT CATGATTTTG CTCATTTAGC GCTAGAAAAT
GGTGCAAGTG CGCTGCTGGT GAGCCGTGAA CTTGCTTTGG ATATTCCCCA GCTTTTGGTC
AGTGATACGC AAAAAGCGAT GGGAGAGATA GGTGCCTATC TTAAGGAGCT TGTTCAGCCT
AAGTCTGTCG CCTTGACGGG CTCGAACGGC AAAACCAGTG TGAAAGAGAT GGTGGCGAGC
ATACTGTCAC AGCATCATAA AGTGCTCTAT ACCGCTGGTA ATTTCAATAA TGAGATTGGT
GTACCGCTGA CTCTGCTTCG TTTAGAAGGT GATGAGGAAT ATGGGGTTTT TGAGTTAGGA
GCAAATCATT TAGGTGAGAT CGATTACACC TCCTCACTGG TGAAACCTGA TGTCGCCATG
GTGAATAATG TGGCATCGGC GCACCTTGAG GGCTTCGGTT CACTTGAAGG TGTTGCTAAG
GCTAAATCGG AGATCTTTAA TCACTTAAGT GCTGATGGAA TAGCGGTGAT CAATTTAGAC
GATCCCTTTG CTGATGTGAT GCGTGGTGCG GCAAGTCAAT TTACTCAGCT CACTTTTGCT
ATCGAGTCAC AAGCTGATGT GAAGGCGAGT GAATTAGTGT CCGACTCATT AGGAAGATAC
AGATTTACAC TGAACTATCT CAACAGTTGT GAGTCGATAA CTCTGCCACT TTCAGGTCGC
CATCAAGTGA GTAATGCCCT TGCTGCAACT GCTATCTGTC TCTCTCTTGG GCTGTCGCTC
GAAGAGGTAT TGAGTGGTCT AAAACTGGTA GAGCCCGTTA AAGGCAGAAT GTTACCCCAT
GAGCTGGGTC GAGTACGAAT TATTGATGAT AGCTATAATG CAAACCCCGC GTCAGTGGGA
GCAGCTATTG ACTGGCTTCA AGAAATTGAT GGATTTCGCT GTTTAGTACT GGGCGATTTG
GGAGAATTAG GTGACAATGC GTCCCTTTTG CATTCTGAGC TAGGCGAATA TGCAAAAAAA
CAGGGGATAG ATGCCCTTTT CACCTTAGGT GAGCTAAGTG AAAATACGGC CGCCGCTTTC
GGTGGACAGC ATCAGCAAGA GTTAGCGCCA CTAGTGCTTT GTTTAATTAA TACCATCAAC
CAGTTACAAG GTGATGTAAC TGTGTTGGTC AAAGGTTCAC GCAGTGCCGG AATGGAACGT
GTCGTTGAGG CCTTAAAAAT TGCCCATGGG CAAGGGGAGT TTGTTTAA
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| Protein sequence | MIRLTLSLLS QRLNGRLIGS DTEILNVCSD SRSIPEKTLF VALKGEKFDG HDFAHLALEN
GASALLVSRE LALDIPQLLV SDTQKAMGEI GAYLKELVQP KSVALTGSNG KTSVKEMVAS
ILSQHHKVLY TAGNFNNEIG VPLTLLRLEG DEEYGVFELG ANHLGEIDYT SSLVKPDVAM
VNNVASAHLE GFGSLEGVAK AKSEIFNHLS ADGIAVINLD DPFADVMRGA ASQFTQLTFA
IESQADVKAS ELVSDSLGRY RFTLNYLNSC ESITLPLSGR HQVSNALAAT AICLSLGLSL
EEVLSGLKLV EPVKGRMLPH ELGRVRIIDD SYNANPASVG AAIDWLQEID GFRCLVLGDL
GELGDNASLL HSELGEYAKK QGIDALFTLG ELSENTAAAF GGQHQQELAP LVLCLINTIN
QLQGDVTVLV KGSRSAGMER VVEALKIAHG QGEFV
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