| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4528 |
|---|
| Symbol | lpxC |
|---|
| ID | 6118894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5490787 |
|---|
| End bp | 5491704 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641636099 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_001762873 |
|---|
| Protein GI | 170728847 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000171794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000235543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTTC AAAGAACTGT TAAAGAAATG GTGAAAACAA CCGGAGTCGG ATTGCATTCC
GGCAATAAGG TGACTTTGAG CATCAAGCCC GCACCTGTAA ATTACGGCAT TGTATTAGTG
CGTACGGATC TGGAGCCAGC AGTTTCAATC CCTGCTAAGG CTGATCAAGT TCGTGAAACC
ACTATGTGTA CTGCGCTAGT TAATGACGAT GGTGTACGTA TCTCGACGAT TGAGCATCTG
TTTGCTGCTT TAGCGGGTCT AGGTATTGAT AATGCATTGA TTGAAGTCGA TGCACCTGAG
ATCCCGATCA TGGATGGCAG TGCCAGTCCA TGGGTATTCC TACTTCAATC TGTAGGAATT
CAAGAGCAAT CAGCGGCTAA GAAATATCTA AGAATCAAAG ACACTATCCG TGTTGAAGAT
GGAGACAAAT GGGCGGAGCT AAAACCGTTT AATGGCTTTA GAGTGGATTT TGCAATCGAC
TTTAACCACC CTGAAATTGC CCGTAGTCAG CAACATATGG TGATGGATTT TTCAACTTCA
GCATTCGTAC GCGATATTAG TAGAGCAAGA ACGTTTGGCT TTATGCGCGA TATCGAATAC
TTAAGAGCTA ACAACTTAGC CTTAGGCGGA AGTATGGAAA ATGCAGTCGT GCTTGACGAA
TATAAAGTCC TCAACCCCGA TGGCTTGCGT TATGAGGATG AGTTCGTTAA GCATAAGATT
TTGGATGCAT TCGGTGACTT ATATGTTGCT GGTCATGCCA TTGTTGGTGA GTTTTGTGCT
TTCAAAACGG GCCATGCACT GAATAATCAA TTAGTGCGTG CACTACTAGC TCAACAAGAT
GCTTGGGAGC TAGTTAGTTT TGAGAAAGAT GAAGCGCCAG TTAGCTTCTC TGTTCCCGCC
GGTGCGGTAT TCGCTTAA
|
|---|
| Protein sequence | MIFQRTVKEM VKTTGVGLHS GNKVTLSIKP APVNYGIVLV RTDLEPAVSI PAKADQVRET
TMCTALVNDD GVRISTIEHL FAALAGLGID NALIEVDAPE IPIMDGSASP WVFLLQSVGI
QEQSAAKKYL RIKDTIRVED GDKWAELKPF NGFRVDFAID FNHPEIARSQ QHMVMDFSTS
AFVRDISRAR TFGFMRDIEY LRANNLALGG SMENAVVLDE YKVLNPDGLR YEDEFVKHKI
LDAFGDLYVA GHAIVGEFCA FKTGHALNNQ LVRALLAQQD AWELVSFEKD EAPVSFSVPA
GAVFA
|
|---|
| |