| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4499 |
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| Symbol | |
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| ID | 6118855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5443396 |
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| End bp | 5445531 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641636061 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001762845 |
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| Protein GI | 170728819 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000101526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGAAC AATATTGGGT AGGGGATTTT TTTGTTGATT TGAGCAGAAA TCAGCTCACC
CAAAAGCAAC AAAGCCAAAC TTTGCCGCCC AAGGCGCTCG CTGTACTAAC CTGTTTAGCT
AAAAATAAAG CTAGTGTAGT CAGTCAAGAT GAGTTGTTGA GCCATGTCTG GCCCAATAGC
GTCGTTGCCC CCAATACTCT ACAACGCTGC ATCGCACAGC TAAGAAAAGC CCTAGGTGAT
GATGGCAAAG TTCAACGTTA TATCAAGACC CATGCTAAAC AGGGCTACAG TCTTGAAGTC
GATGTGCATT GGCAGCAACC TGAACCTAAT AACGCAAACA AAGACTCATC TCCCTTGCCG
ACAACACTGG CTGTGCAAGT AGAGGATTCG CCGCATCAAC CAAGTAAGAC CGTCTCGCGC
TTAATCTCTG CCGTAATCGC GTTACTGATT ATAGTGTTCG GGGTTATCGG TTATCAGTTT
TTTCCCCTAA CAGCATCAAC CCCGTTAGTG GTTAAAAGTA TGCAGCCGCT GACCTCTACT
GACAACAGGG AGCTGGCCAG TATCTATTCC CCTGATGGCG AATATGTCAT CTTTATGCGA
TACCCCGAAG TCTTATGTAC CAGCCATTTA TGGGCGAAAA ACCTCGCTAC TCAAGAGGAG
TTTCAACTTA CTCAAGATTT AGGTTCATAT GGCAGCCTAG CTTTTGCAGA TGATGGCAGC
AAACTTGCCT TTGTCGAACA AAATAGTTGC GGACAAGCTG TCACTCAGAA AAGCTGCTTT
CAATTACAAA GCTTAGATTT TGCCAAGGCG CTAAAATCAC CGCAAACACC GACCACTCTG
ATGGAGTGTA ACAACTCAAA AATTCGCTCG CTGCAGTGGC TCAATCAAGA CCAAGTCACT
TTAATGCAAC AACTGGCTCA TCGCTGGCAG CTTATCCGCT ATTCAATCAG TAGTCACAGC
AGTGACACGA TTTTTTCCCT TGAGGATGGC AATTTAATCG ATTATGACTA CTCGCCAAGT
CAAAACCTCA TTGCGCTTAC TAGTATTCAT CATGATGACC AGCGTTATAT CGAAACCTTA
ACCCCTGATG GACAACTTGC TAGCAGTCAT CTCATTGACT ATCCAGATAG CATTCCTAAG
TTTCGTAATA TCTCTGCCAA TTTTTCTCCG CGGGATAACC AGCTGATCTT CAGTACCGGT
AAGCAGCTGT TTACCCTCTC CTTCAAAGGT CAAATTACCC CAGTGAGCTT GCCGCTAGTC
GATGGGATTG GTTCACCGCT TTTCCATCCC GATGGTAAAA GAATGCTAGC CATAAAAGGC
CACTATGACA GTGATATTGT TGCAGTGCCG CTATCACAAT TTACCGATAA TCCACTATCT
CTCGATGGCA GTAACTTCCG CCATAGCGTG ATCGCTCGCT CTACATTCGG TGAAAATCAC
GCAAAGTATC AACCTAATGG AGATGCCATT GCTTATACCT CAAAACGTTC AGGCAGTTGG
CAAATGTGGT TGACTCAGGG GAGCAATACT CAGCAATTAA GTCAGTTTCC ACTAAGCAGT
TATATCTATG ACTTTGTTTG GGGGGCCGAT GGAGACAGTT TACTGGTCAA CGTCTCTTCT
GAGCTAAAAC AGATCGATGT AAACGGCGGT GAAACTAGCA TCAGCTTAGC ACAACCGCTT
TCCAAGCTGT TTGATTGGGA TAGCAGTAAG CAGACTGCTT TAGCCATGGT TCAGATACGC
GGCGTGGAAA GATTTGCTGA AATTAACCTA GCAACCGGAG ATATACACCA GCTTAGTGAT
AAGCGAATCA CCTGGGCGGC AAAAAGTGAC ACTGGCCAGT TAATTTATAT GGACCATATG
GATAGATTTT GGCGCCCCGA TGGCGCAGAG GACAAGCTAG TCAGCGCATT GGAATTGCAA
GGCAGTGATA AGCGTTTCAT CATCAAGAAT AACCTTGTTT ATGGAGTTAA TGATGATTTT
CAACTCTGGT CATATGGGCT AGACGACAAG CAATTTAGGT TTATCGGTCA ACTACCAGAC
ACCATTGATT ATATTACTGA CCTTAAAAAG CAAACCTTGC TAATGACCAT GCGCATTGCC
GCCAGAAAAG ATGTGGTAGA GCTCACGTTA GACTAA
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| Protein sequence | MEEQYWVGDF FVDLSRNQLT QKQQSQTLPP KALAVLTCLA KNKASVVSQD ELLSHVWPNS
VVAPNTLQRC IAQLRKALGD DGKVQRYIKT HAKQGYSLEV DVHWQQPEPN NANKDSSPLP
TTLAVQVEDS PHQPSKTVSR LISAVIALLI IVFGVIGYQF FPLTASTPLV VKSMQPLTST
DNRELASIYS PDGEYVIFMR YPEVLCTSHL WAKNLATQEE FQLTQDLGSY GSLAFADDGS
KLAFVEQNSC GQAVTQKSCF QLQSLDFAKA LKSPQTPTTL MECNNSKIRS LQWLNQDQVT
LMQQLAHRWQ LIRYSISSHS SDTIFSLEDG NLIDYDYSPS QNLIALTSIH HDDQRYIETL
TPDGQLASSH LIDYPDSIPK FRNISANFSP RDNQLIFSTG KQLFTLSFKG QITPVSLPLV
DGIGSPLFHP DGKRMLAIKG HYDSDIVAVP LSQFTDNPLS LDGSNFRHSV IARSTFGENH
AKYQPNGDAI AYTSKRSGSW QMWLTQGSNT QQLSQFPLSS YIYDFVWGAD GDSLLVNVSS
ELKQIDVNGG ETSISLAQPL SKLFDWDSSK QTALAMVQIR GVERFAEINL ATGDIHQLSD
KRITWAAKSD TGQLIYMDHM DRFWRPDGAE DKLVSALELQ GSDKRFIIKN NLVYGVNDDF
QLWSYGLDDK QFRFIGQLPD TIDYITDLKK QTLLMTMRIA ARKDVVELTL D
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