| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4446 |
|---|
| Symbol | |
|---|
| ID | 6118802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5382629 |
|---|
| End bp | 5383939 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641636009 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_001762793 |
|---|
| Protein GI | 170728767 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTAAAAG TTACTCCTTA TTTGGAATTA GACTGTGAAG CTAACCAACT TGTCGATCGT
GTGACTCGAA CGACAATAGG GCTCACTTTT TCCGAATCTG CCATTCTCTC TCATCTGCTC
ACAACACCCG ATGCAATATG TGATAAAGAT GTGTTGCTGC AAGTGGGCTG GCCTGACCGT
GTCGTTGCTG CTACCTCCCT AACCCAATGT GTCAGCACCC TTAGAAAGAA GCTTGAGCCC
TACCCTGAGG TGCAACTTAA AACCGTTGCC AGAAGAGGGT ATCAGTTACA TATCTCGATA
AAATCCCATG TGAAGATGTT GGCGGTTAAT GATGCCGAGT CGATAAAAAC GGCGCTGTTT
GATGTGTCGT TAATCGTTAA GCTTGGTGGG ATAGTGGTGT TGCTGGCACT GATCGCATGG
GCTTGGCTTA GCAGTGATAG CTACAACGTG ATGCAGGAGA CAGGCAAGTG GCGTTCAGAT
AAACAGATCC CGTTGAACTT AGGCGGTACT AATGAGAATG CACAGCTTAT CTACCCAGAT
GGGGAAGATA GGCTTCATCC CTCTATGTGG CAGAAACATA TTGCGCCGGA AACTAATCAG
ATCACCAGCA TTGATAACTT TAGTGCTTAT GCATTTACCG ATGGAGAGCA TTACTCATTC
GCCAGTTGCG AGACGGATAG AGATGGTCAC TGTATTAGTG ATCAGATGAT CAATCTGGCG
GCGATCGGAT TAACGCCCGC TGGTTTAGAC ATGAAGGAGT TTATGAAGTT AAGCCGAGCG
ATGGAGAAGC GGATCCGTTA TAACCGAGTA CTGCTGCCAG CACATGTGGT ATTTGAAGAG
AAAGAGAAGA TAAAGTCCGT TGAACCTGAG TTTATTGAGC ATCATTATCA CGGTGATATC
TACTTCCCTG TGGCGAATGA GCTGTTGGTG CGCGCAGATC TGGGCATATC TCTGGTTTAT
GGAGAGGAGA ATCGCGGAAA GTTTTACTCC TCAACCTGCA TTACAGATGA GGATTGTTTA
ACTACGCCGA TTAAATATCA GGTACGCGGT GAGTTTGAGC AGTATCAAGA GAAGATAGAT
AACCTAAATG TAGATGTCTT CTATGTGAAG GTTACTCAGA AAGATTTGAT TAAACCAGAT
GTTGTCAGCG CATCGGCGAT GCACTTTTAC CGTGAGATAA GAAAGCACAA TATTCGCGAT
GAAGAGCTAT TTTACTACCG CATTCACAGC GACAACCAAA CTTCTGTTTG GGTGGTCCCT
CTGATGGGAA ATATCATCGT CTGGACCAAA TATGAGAAGG TTGAATTATA G
|
|---|
| Protein sequence | MLKVTPYLEL DCEANQLVDR VTRTTIGLTF SESAILSHLL TTPDAICDKD VLLQVGWPDR
VVAATSLTQC VSTLRKKLEP YPEVQLKTVA RRGYQLHISI KSHVKMLAVN DAESIKTALF
DVSLIVKLGG IVVLLALIAW AWLSSDSYNV MQETGKWRSD KQIPLNLGGT NENAQLIYPD
GEDRLHPSMW QKHIAPETNQ ITSIDNFSAY AFTDGEHYSF ASCETDRDGH CISDQMINLA
AIGLTPAGLD MKEFMKLSRA MEKRIRYNRV LLPAHVVFEE KEKIKSVEPE FIEHHYHGDI
YFPVANELLV RADLGISLVY GEENRGKFYS STCITDEDCL TTPIKYQVRG EFEQYQEKID
NLNVDVFYVK VTQKDLIKPD VVSASAMHFY REIRKHNIRD EELFYYRIHS DNQTSVWVVP
LMGNIIVWTK YEKVEL
|
|---|
| |