| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4444 |
|---|
| Symbol | |
|---|
| ID | 6118800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5380167 |
|---|
| End bp | 5381648 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641636007 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_001762791 |
|---|
| Protein GI | 170728765 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA AGGATTTACG CAGTTTTATA GACCACCTAG AAAGCCAAGG TGAACTAAAG
CGTATTAGCC ATCCGGTCGA TCCTAATCTT GAAATGACAG AGATCGCCGA TCGCGTGTTA
CGCGCTAAAG GGCCAGCCCT GTTATTTGAA AACCCTGTAG GCAATGATAT GCCTGTTTTA
GCTAACCTTT TTGGTACGCC AAAACGCGTT GCTATGGCAT TGGGTAAAGA GGACCCCCTC
GCACTAAGAG AGGTCGGTGA GCTATTGGCT TTTCTGAAAG AACCTGAGCC ACCTAGAGGG
TTTAAAGACG CGATCGCTAA GATCCCCATG TTTAAGCAAG CCCTAAACAT GCCACCTAAG
ACAGTCCGCA ATCCGCCCTG CCAGCAAGTA GTCAAAACGG GAGAGGAGGT CGATCTCACT
AAACTCCCCA TTCAGCACTG CTGGCCTGGT GATGTCGCCC CGCTAGTGAC TTGGGGATTA
ACCATCACTA AGGGACCTCG CCAAAAGCGC CAAAACTTAG GGATCTACCG TCAGCAGCTT
CTCGGGAGAG ACAAACTGAT AATGCGCTGG CTCGATCACC GTGGTGGTGC ATTAGATTTT
AAAGATTTTA AAGAGAAACA CCCAGGTGAA CGCTACCCAG TCGTCGTTGC CTTAGGTTCA
GATCCTGTGA CCATTTTAGG CGCGGTAACT CCAGTACCAG ACTCCATGAG CGAGTATGCT
TTTGCAGGCC TTCTGCGCGG TGAGCGCACC GATGTCTGCA AGGCGATAAG CTGCGATTTA
GAGGTACCGG CCACTAGTGA GATCATTCTC GAAGGTTATA TTGACCCTGA TGAGATGGCA
GAAGAGGGTC CCTATGGTGA TCACACGGGT TACTATAATG AGACTGACTC ATTCCCTGTC
TTTACCGTGA CCCATATTAC CCACAGAAAA GATGCCATCT ACCACAGTAC CTACACAGGC
CGTCCACCTG ATGAGCCGGC TATGCTAGGT GTCGCACTTA ATGAAGTGTT CGTGCCTATC
TTACGTAAGC AGTATCCAGA AATTATCGAC TTTTATCTGC CACCTGAAGG TTGCTCCTAC
AGAATGGCCG TGATCTCCAT ACGTAAACAG TACCCGGGTC ATGCTAAACG GGTCATGATG
GGTGCTTGGT CATTCCTGCG TCAGTTTATG TACACTAAAT TTATCGTCGT AGTAGATGAG
GATGTGAACT GCCGAGATTG GAACGATGTC ATCTGGGCCA TCACCACGCG CATGGATCCT
AAACGTGATA CTGTAATGAT AGAGAACACA CCTATCGATT ACCTCGATTT CGCCTCTCCG
GTTGCAGGAC TCGGCTCTAA GATGGGCATG GATGCAACCA ATAAGTGGGA AGGTGAAACC
GATCGCGAAT GGGGAACACC TATCGTCATG GATCAAGCGG TAAAAGATAA AGTTGACCAG
ATCTGGGCCG ACTTGGGCAT AGATGACGCC CCTACCCTAT AA
|
|---|
| Protein sequence | MSFKDLRSFI DHLESQGELK RISHPVDPNL EMTEIADRVL RAKGPALLFE NPVGNDMPVL
ANLFGTPKRV AMALGKEDPL ALREVGELLA FLKEPEPPRG FKDAIAKIPM FKQALNMPPK
TVRNPPCQQV VKTGEEVDLT KLPIQHCWPG DVAPLVTWGL TITKGPRQKR QNLGIYRQQL
LGRDKLIMRW LDHRGGALDF KDFKEKHPGE RYPVVVALGS DPVTILGAVT PVPDSMSEYA
FAGLLRGERT DVCKAISCDL EVPATSEIIL EGYIDPDEMA EEGPYGDHTG YYNETDSFPV
FTVTHITHRK DAIYHSTYTG RPPDEPAMLG VALNEVFVPI LRKQYPEIID FYLPPEGCSY
RMAVISIRKQ YPGHAKRVMM GAWSFLRQFM YTKFIVVVDE DVNCRDWNDV IWAITTRMDP
KRDTVMIENT PIDYLDFASP VAGLGSKMGM DATNKWEGET DREWGTPIVM DQAVKDKVDQ
IWADLGIDDA PTL
|
|---|
| |