| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4425 |
|---|
| Symbol | |
|---|
| ID | 6118780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5360057 |
|---|
| End bp | 5360776 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641635987 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001762772 |
|---|
| Protein GI | 170728746 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA TAGCTAAGGT AATGACGCTA TTTATATTCG TGTTAGGCAG TTTTACATTT
GTAAACCGAG ATGCGCATGC CCAGATCACC CATGTCAGTA TTAACCAGAA GTTATTCAGT
TTAGGTGAGT ATCCTAAGTT TAGGCTTAAC ATCGTCTCTG AAAGTGGCAA CTACAGTAAG
ATGCAGTTTG TGGTCCAGCA AGGTGGCAGT GAAGAGAGGT TGATGGTTAA ACCTATCAAT
AAATTTCTAC TTTTGCTCAC AGGTGTTGAA GATGTGGTTG ACCCATCGGC ACGTTTAGTT
ATTAGAGAGT ATCGAGTCAA TAAGTGGCGG GATGTGAAGC GTTTTGAACT CTTCAGTGGC
GATGAGCAAC ATGTCACACC AAGGGTAAAG AAAAAAGTGC TAGAGAGTGA GATTAAAAGG
GTGGAAAGCC GTCTTGTTGA ACTGCAAGGT GCTGGGGCTC TGAATGATGG TGCTTGTCAA
CTGAGCACTT TACCTGGGCA GACCCTTTGG CGCATCGCAA CGCAATATAG TAAAGAGTGG
GGGATGTCAC CTCAAGGTGG TGCAGTAGCT ATTTATGAGG CAAACCCTCA GGCATTTAGT
GCTGAGAGCA TAAGTAGTTT AAGGGCTGAC TCCAAATTAA TGTGCCCGTC TGATCTAATT
AAAAATAAGT ACAAAGACCC TAATGTCGCG CAGCGAACAT ATAAAACATT ACTTAATTAA
|
|---|
| Protein sequence | MAKIAKVMTL FIFVLGSFTF VNRDAHAQIT HVSINQKLFS LGEYPKFRLN IVSESGNYSK
MQFVVQQGGS EERLMVKPIN KFLLLLTGVE DVVDPSARLV IREYRVNKWR DVKRFELFSG
DEQHVTPRVK KKVLESEIKR VESRLVELQG AGALNDGACQ LSTLPGQTLW RIATQYSKEW
GMSPQGGAVA IYEANPQAFS AESISSLRAD SKLMCPSDLI KNKYKDPNVA QRTYKTLLN
|
|---|
| |