Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4414 |
Symbol | |
ID | 6118769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5347354 |
End bp | 5349111 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641635976 |
Product | type II secretion system protein E |
Protein accession | YP_001762761 |
Protein GI | 170728735 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0327101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAACCAA AGTTAAAGAT GCGTTTGGGT GATCTGCTGG TACAAGAGCA GATCATTAGT GAGTCTCAGC TAACCCAAGC ACTGAGTGAG CAGAGAAATA CAGGTAAGAA GCTAGGCCGA ACCTTAATAG ACTTAAACAG TTTATCCGAG GAGCAGTTAC TTAGGTTTCT CTCTCAGCAG CTTAATATTC CATTTATCGA CATCAGCAGA AGGCCAATTG CAGCAGAAGT TGTTAACCTC TTACCTGAAG TTCAGGCTCG CCGTTTTAGA GCTTTAGTTG TCGAAGATAA TGGTGAAAGT GTATTGGTTG CCATGAGCGA TCCTGCCGAT CTACAGGCGA TGGATAACTT AGAGGTATTA CTGACTCCTA AAGTGATGGA GATTGCCGTT GTTACAGAGC AACAGCTGCT GGACGCTTTT GATAACCTAT ATCGTAGAAC CGATCAGATC GCCGCGATCG CTGGAAAACT TGAGGAGGAG TATGCTGCTG ACGATCAGTT TGATCTGGCA AGCTTAACCG ATGGTGACAG TGACAATGAG ACCACGGTTG TAAAACTGCT GCAGTCAATC TTCGAAGATG CGGTGCAGAT GAGAGCTTCG GATATTCATA TTGAGCCTGG TGAGAAAGTA TTAAGAATAC GCCAACGTAT CGATGGTCAG CTGCATGAGA ATATCCTGCC TGAAGCCAGC ATTGCGGCAG CGCTAGTATT AAGACTTAAA TTGATGGCAG GTCTTGATAT CTCTGAAAAG CGTCTGCCTC AAGATGGACG CTTTCATATG GAGATAAAGG GTCACAAAAT CGATGTACGT ATGTCGACCA TGCCTATCTA TCATGGCGAA TCTGTTGTAA TGCGTTTATT GGATCAATCA GCAGGTCTGC TTACGTTGAA TGAAACGGGT ATGCCGCCAG AAATCTTAGC TCGTGTTCGC AAACAGATTA AACGCCCCCA TGGTATGTTG CTGGTGACCG GACCTACTGG TAGCGGTAAA ACAACGACAC TCTATGGCGT ACTCAGTGAG CTCAATACTG CAGATCGTAA GATAATTACC GTAGAAGATC CTGTCGAGTA TCAGTTACCC AGAATCAATC AGGTCCAAGT TAATCACAAG ATCGGCTTAG ATTTCTCCAA TGTATTAAGA ACTACGTTAC GTCAAGATCC CGATATCATC ATGGTGGGTG AGATGCGTGA TCAGGAGACT GTAGAGATAG GACTTAGGGG CGCACTCACT GGTCACTTTG TATTATCAAC CTTGCATACT AACGATGCAG TAACCAGTGC GCTACGTCTG CTGGATATGG GAGCGGCTAG CTATCTGGTT GCCAGTGCAT TAAGGGTGAT CATTGCCCAG CGACTCGTTA GGCGTGTTTG TCAAAACTGC TCTAGGGAAT ATCACCTAAC TGCGCAAGAC AAAGTCTGGA TGAACTCGGT CAGTAAGCAA GATTTCTCAC ATGCGAACTT TAAAATTGGG GCCGGTTGCC AAAGCTGTAA TGGCAGTGGT TATCGTGGTC GTATTGGTGT ATTTGAGATA TTAGAGCTAG ATGAGGGCAT GATCGATGCG ATGCGAACTG GAAACCCACA GGATTTTTCA CGGGCAGCAC ATGAAAGCCC TAACTTTACT CCATTAGCTG TTTCGGCGAT GAAGTATCTA GCTGAAGGAA TGACAACCAT CGAAGAGGTC GCCAAATTGA TTGAGGATGT GAGTGAGTCT CAAGTTGCCC TATCGACAGA TATGGCTGAA GAGCTACCTG AGGCCTGA
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Protein sequence | MKPKLKMRLG DLLVQEQIIS ESQLTQALSE QRNTGKKLGR TLIDLNSLSE EQLLRFLSQQ LNIPFIDISR RPIAAEVVNL LPEVQARRFR ALVVEDNGES VLVAMSDPAD LQAMDNLEVL LTPKVMEIAV VTEQQLLDAF DNLYRRTDQI AAIAGKLEEE YAADDQFDLA SLTDGDSDNE TTVVKLLQSI FEDAVQMRAS DIHIEPGEKV LRIRQRIDGQ LHENILPEAS IAAALVLRLK LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG MPPEILARVR KQIKRPHGML LVTGPTGSGK TTTLYGVLSE LNTADRKIIT VEDPVEYQLP RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCQNC SREYHLTAQD KVWMNSVSKQ DFSHANFKIG AGCQSCNGSG YRGRIGVFEI LELDEGMIDA MRTGNPQDFS RAAHESPNFT PLAVSAMKYL AEGMTTIEEV AKLIEDVSES QVALSTDMAE ELPEA
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