| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4408 |
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| Symbol | |
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| ID | 6118763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5342752 |
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| End bp | 5343264 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641635970 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_001762755 |
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| Protein GI | 170728729 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00456827 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAGAG CAAAACAGCT GGGTTTTACC TTGATTGAAT TAGTGGTGGT TATCATTATT
TTAGGTCTTT TGGCGGTAAC TGCCGCGCCT AAATTTATCA ACCTTCAAAG CGATGCTAAA
GCATCTACTT TAGAAGGGTT TAGAGCTGCG TTACAGGGGG CTAATACTCT GGTATTTTCA
AAAGCGGCAG TTGCTGGTGA AGAGCGTATT GCAGATGCTG CTGGGTGGGC GGCTAATACG
GGTAATACCG CGGGCGTCGA TATTGGTACG GGCACACCGA TACAAACTGT ATATGGTTAC
CTGCCTGAAG ATGCAGCTGT TATAGGAGCT GCAATGGATG TGGACTCTAG TGAGTGGGTG
GCCACCGCGG TTCCGGGAGG GGGCTTGGCG TTTAGTCCCC AAGGTGCGCC AGCCGATACC
TGTAATTTTG TTTATGTGGA AGCGACATCT ACAACCGAGC CAACCTATAC ACTCTATACC
CCAGTAGGAG CTCAAGACCC CTTCGCCTGT TAA
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| Protein sequence | MRRAKQLGFT LIELVVVIII LGLLAVTAAP KFINLQSDAK ASTLEGFRAA LQGANTLVFS
KAAVAGEERI ADAAGWAANT GNTAGVDIGT GTPIQTVYGY LPEDAAVIGA AMDVDSSEWV
ATAVPGGGLA FSPQGAPADT CNFVYVEATS TTEPTYTLYT PVGAQDPFAC
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